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freebsd-ports/science
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Yuri Victorovich 787a848e54 e-added port: science/PETSc: Suite of data structures and routines from Argonne National Laboratory (existed 2004/11/21-2014/09/01, deleted in r366959) 
Replacing the identical version committed by me as a new port in r456696.
The old math/petsc port also had a slave port math/petsc-mpich that has also been deleted.

Original differential revision is https://reviews.freebsd.org/D13527

Submitted by:	myself
Reported by:	thierry that math/petsc and math/petsc-mpich existed before
Approved by:	adamw (mentor)
2017-12-21 00:26:58 +00:00
..
2d-rewriter
afni Mark more recently failing ports broken on aarch64. 2017-12-19 14:41:29 +00:00
aircraft-datcom Add new port science/aircraft-datcom 2017-12-03 21:26:18 +00:00
ALPSCore New port: science/ALPSCore: Generic algorithms and utilities for condensed matter physics 2017-12-03 19:29:13 +00:00
avogadro Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
bddsolve devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
bft - Fix LICENSE 2017-12-06 09:00:23 +00:00
bodr - Add LICENSE 2017-05-02 09:00:11 +00:00
brian Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
buddy
cdcl For ports that are marked BROKEN on armv6, and also fail to build on 2017-11-30 06:13:34 +00:00
cdf For ports that are marked BROKEN on armv6, and also fail to build on 2017-11-30 06:13:34 +00:00
cdo Update to 1.9.2 2017-12-12 13:32:53 +00:00
cgnslib Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
cgribex Add GRIB_API option 2017-02-12 08:20:20 +00:00
checkmol - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:48:32 +00:00
chemical-mime-data Use USES=pathfix where applicable. 2016-10-21 15:21:13 +00:00
chemps2 New port: science/chemps2: Spin-adapted implementation of DMRG for ab initio quantum chemistry 2017-11-23 05:58:51 +00:00
chemtool Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
chemtool-devel Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
clhep Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
colt The output of tools like awk, date, sort, tr,... depends on the current 2017-01-18 13:20:31 +00:00
crf++
dcl Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
devisor
dkh New port: science/dkh: Wolf, Reiher, and Hess's Douglas-Kroll-Hess relativistic correction 2017-11-13 06:08:40 +00:00
dlpoly-classic Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ecs Chase metis-edf's upgrade. 2017-11-16 20:55:27 +00:00
epte
erd New port: science/erd: AcesIII electron repulsion integrals 2017-11-14 18:44:05 +00:00
fastcap Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fasthenry Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fisicalab Fix configure options for gnustep-make 2017-12-03 12:23:53 +00:00
fvcom Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
fvcom-mpi
fvm Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
gchemutils Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
gdma New port: science/gdma: Anthony Stone's Gaussian Distributed Multipole Analysis 2017-11-18 05:12:35 +00:00
getdp Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ghemical Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ghmm
gnudatalanguage - Those ports fail to build with python3 2017-12-10 20:48:45 +00:00
gramps - Fix LICENSE 2017-12-18 09:00:35 +00:00
grib_api Update to 1.24.0 2017-11-12 19:09:49 +00:00
gromacs devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
gsmc Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
gtamsanalyzer Fix configure options for gnustep-make 2017-12-03 12:23:53 +00:00
gwyddion Security update OpenEXR and ilmbase to 2.2.1. 2017-12-01 01:58:23 +00:00
h5utils - Update to 1.13 2017-07-26 13:42:00 +00:00
harminv Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hdf Also not for armv7. Missed in previous sweep. 2017-11-30 06:43:49 +00:00
hdf5 Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hdf5-18 Forgot to bump revision of FORTRAN libs in the previous commit. 2017-12-03 15:30:23 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 8.0.2 2017-08-08 17:21:45 +00:00
hypre Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
iboview devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
InsightToolkit science/InsightToolkit: Update to 4.12.2 2017-09-23 12:12:08 +00:00
isaac-cfd Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
jstrack Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
kalzium Chase ffmpeg 3.3 update (ABI changes) 2017-04-25 08:20:30 +00:00
kst2 Update to 4.5.0 2017-10-21 20:18:16 +00:00
lamprop
libaec Update to 1.0.2 2017-11-12 19:09:54 +00:00
libctl Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libefp New port: science/libefp: Effective fragment potential method in quantum chemistry 2017-11-14 04:31:58 +00:00
libgeodecomp devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
libghemical Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libint Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libkml devel/google{test,mock}: update to 1.8.0.358 2017-09-25 00:51:02 +00:00
liblinear * Updated to 2.11 2017-06-25 16:21:46 +00:00
liboglappth Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
libquantum
libsvm * Updated to 3.22 2017-06-19 17:27:24 +00:00
libsvm-python
libxc Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
linsmith
massxpert Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mbdyn Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mcstas science/mcstas: switch back to PORTVERSION 2017-12-06 16:18:35 +00:00
mcstas-comps Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
mcxtrace New port: science/mcxtrace: Monte Carlo X-ray tracing package 2017-12-05 19:15:49 +00:00
medit Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
meep Fix options usage. 2017-10-27 12:19:20 +00:00
mei Switch from swig1.3 to swig 3.0 2017-12-20 12:25:18 +00:00
metaf2xml Fix whitespace issues (mixed tab/spaces, alignment) in a few ports. 2017-10-31 14:51:53 +00:00
minc2 Update to 4.5.0 2017-10-21 20:18:16 +00:00
mol2ps - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:50:29 +00:00
MOOSE-neural-simulator New port: science/MOOSE-neural-simulator: Multiphysics Object Oriented Simulation Environment 2017-12-19 16:04:34 +00:00
mpb Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mpqc Remove USES=execinfo. 2017-09-22 10:48:28 +00:00
mpqc-mpich
ncs - Those ports fail to build with python3 2017-12-12 12:40:15 +00:00
netcdf Update WWW 2017-12-11 10:37:14 +00:00
netcdf-cxx Update WWW 2017-12-11 10:37:19 +00:00
netcdf-fortran Update WWW 2017-12-11 10:37:24 +00:00
nifticlib Pass -fPIC when building the port's static libraries. 2016-12-28 14:54:37 +00:00
openbabel science/openbabel: Update to 2.4.1 2017-05-24 01:43:00 +00:00
openkim For ports that are explicitly enabled on armv6, also enable them 2017-10-10 21:31:30 +00:00
orthanc Cleanup LIB_DEPENDS on libpng 2017-12-01 07:19:53 +00:00
orthanc-dicomweb - update from 0.3 to 0.4 2017-10-30 14:57:16 +00:00
orthanc-postgresql devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
orthanc-webviewer - update from 2.2 to 2.3 2017-10-30 14:20:02 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.36 2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Geo-Coordinates-Converter-iArea Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Mcstas-Tools Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
p5-PerlMol
p5-Physics-Unit Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
paje Fix configure options for gnustep-make 2017-12-03 12:23:53 +00:00
paraview science/paraview: Unbreak build with clang 4.0 2017-12-13 03:34:37 +00:00
pcmsolver New port: science/pcmsolver: API for the Polarizable Continuum Model 2017-11-14 18:05:42 +00:00
PETSc e-added port: science/PETSc: Suite of data structures and routines from Argonne National Laboratory (existed 2004/11/21-2014/09/01, deleted in r366959) 2017-12-21 00:26:58 +00:00
pnetcdf Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
psychopy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
pulseview science/pulseview: Update to version 0.4.0, switch to QT5. 2017-10-11 21:50:30 +00:00
py-cdo Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-coards
py-DendroPy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-h5py Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-hcluster Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-mdp Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-mlpy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-netCDF4 Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-obspy - Update to 1.1.0 2017-12-16 06:11:08 +00:00
py-paida Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-pupynere
py-pyaixi Convert CC license names to r421995 spellings 2016-09-28 06:38:00 +00:00
py-pydicom Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
py-pymol - Canonicalize LIB_DEPENDS 2017-12-19 20:06:09 +00:00
py-pysal Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-pyteomics Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-pyteomics.biolccc Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-qspin New port: science/py-qspin: Learn quantum spin and entanglement 2017-11-10 21:55:26 +00:00
py-scikit-fuzzy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scikit-learn Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scikit-sparse Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scimath Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scipy Remove dependency on swig 2017-12-20 15:25:16 +00:00
py-scoria Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-tensorflow Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-ws2300 - Update to 1.10 2016-12-29 01:39:00 +00:00
pybrain Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
pycdf Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
pynn - Update to 0.9.1 2017-05-23 02:34:02 +00:00
qcl Update devel/readline to 7.0 patch 3 2017-06-27 13:46:53 +00:00
qtresistors
R-cran-AMORE qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-bayesm - Update to 3.1.0.1 2017-08-08 12:07:25 +00:00
R-cran-cmprsk qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-DCluster qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-e1071 - Update to 1.6-8 2017-05-07 07:46:15 +00:00
R-cran-eco qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-Epi - Update to 2.19 2017-08-28 11:50:57 +00:00
R-cran-epicalc
R-cran-etm qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-fastICA science/R-cran-fastICA: FastICA Algorithms to Perform ICA and Projection Pursuit 2017-12-18 12:31:46 +00:00
R-cran-kernlab - Add new port: science/R-cran-kernlab 2017-09-10 07:06:04 +00:00
R-cran-snow - Update to 0.4-2 2016-10-16 04:21:12 +00:00
R-cran-som
R-cran-udunits2 - Add new port: science/R-cran-udunits2 2017-06-27 03:36:03 +00:00
rubygem-ai4r Update LICENSE 2017-09-24 18:49:56 +00:00
rubygem-cdo Update to 1.3.4 2017-09-08 21:52:00 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf Update to 4.5.0 2017-10-21 20:18:16 +00:00
sigrok-cli science/sigrok-cli: Update to version 0.7.0. 2017-10-11 21:48:56 +00:00
sigrok-firmware Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2laf: Update to version 0.1.5. 2017-10-11 21:48:08 +00:00
sigrok-firmware-utils Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
silo Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
simlib For ports that are marked NOT_FOR/ONLY_FOR armv6, also mark them so 2017-11-30 05:55:17 +00:00
simsmith
step Update math/libqalculate to 1.0.0a 2017-08-03 07:13:39 +00:00
svmlight - With license framework, there's no longer need to shove license to docs, pkgmessage and restricted 2017-01-30 09:01:22 +00:00
szip Fix CONFLICTS_INSTALL 2017-05-27 19:42:13 +00:00
tfel Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
udunits Update WWW 2017-12-11 10:37:28 +00:00
v_sim Update to 4.5.0 2017-10-21 20:18:16 +00:00
veusz Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
vmd Update to 4.5.0 2017-10-21 20:18:16 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.8.1 2017-03-05 08:09:35 +00:00
xmakemol Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
Makefile Re-added port: science/py-pymol: OpenGL based molecular visualization system (existed 2002/08/13-2014/09/01, deleted in r366862) 2017-12-19 19:49:17 +00:00