4cda17ab14
- java/openjdk7* has been removed from the tree since 2022-09-03 however the relevant codebases in bsd.java.mk has not been removed and the consumers has also not been updated to use the next jdk version. This commit updates all relevant consumers to use JAVA_VERSION=8 instead of JAVA_VERSION=1.7 - Since the introduction of jdk version 18 it looks like similar with jdk version 8(java version string 1.8). This is prone to error as it looks similar and is only seperated by a '.'. Remove using JAVA_VERSION with dotted fomat of java version string and update all consumers to utilize version 8 instead of 1.8. Approved by: portmgr (blanket)
36 lines
790 B
Makefile
36 lines
790 B
Makefile
PORTNAME= picard
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DISTVERSION= 2.22.9
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CATEGORIES= biology java
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MASTER_SITES= http://github.com/broadinstitute/picard/releases/download/${PORTVERSION}/
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PKGNAMESUFFIX= -tools
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DISTNAME= ${PORTNAME}
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EXTRACT_SUFX= .jar
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= CLI tools for manipulating high-throughput sequencing (HTS) data
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WWW= https://broadinstitute.github.io/picard/
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LICENSE= MIT
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RUN_DEPENDS= samtools:biology/samtools
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USE_JAVA= 8+
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JAVA_RUN= yes
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CONFLICTS_INSTALL= picard # bin/picard
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SUB_FILES= picard
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NO_BUILD= yes
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NO_ARCH= yes
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PLIST_FILES= bin/picard ${JAVAJARDIR}/picard.jar
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do-extract:
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# No extract
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do-install:
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${INSTALL_DATA} ${DISTDIR}/${DISTNAME}${EXTRACT_SUFX} \
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${STAGEDIR}${JAVAJARDIR}
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${INSTALL_SCRIPT} ${WRKDIR}/picard ${STAGEDIR}${PREFIX}/bin
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.include <bsd.port.mk>
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