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freebsd-ports/science
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Martin Wilke ddadb825d1 - Update to 4.6 
PR:		175589
Submitted by:	Ports Fury
2013-02-10 07:56:49 +00:00
..
2d-rewriter
2dhf
abinit - update png to 1.5.10 2012-06-01 05:26:28 +00:00
afni update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
avogadro science/openbabel: 2012-12-11 14:19:54 +00:00
bddsolve
bft Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
bodr
brian - Update to 1.4.0 2012-09-04 07:13:08 +00:00
buddy
cdcl Update to 5.4.7 2012-12-19 03:01:41 +00:00
cdf
cdo - Convert to new options framework 2012-06-18 16:41:51 +00:00
cgnslib Fix HDF5 description. 2012-12-10 18:20:15 +00:00
checkmol - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
chemical-mime-data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool-devel - update png to 1.5.10 2012-06-01 05:26:28 +00:00
clhep
colt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
crf++
dcl - Update to 5.4.7 2012-12-13 02:25:38 +00:00
devisor Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
dlpoly-classic DL_POLY is a general purpose classical molecular dynamics (MD) simulation 2012-04-17 17:35:33 +00:00
dtiquery
ecs add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate 2012-07-09 11:11:44 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte - Update to 2.0.8 2012-08-06 07:19:41 +00:00
euler - update png to 1.5.10 2012-06-01 05:26:28 +00:00
fastcap
fasthenry
felt - Update to version 3.07 2012-12-01 00:00:12 +00:00
flounder - Fix build with clang 2012-12-23 19:11:12 +00:00
fvm Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
g3data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gamess Fix typo. 2012-09-14 05:47:44 +00:00
gchemutils science/openbabel: 2012-12-11 14:19:54 +00:00
gdis - update png to 1.5.10 2012-06-01 05:26:28 +00:00
getdp - forgot to remove a file in the last update. 2012-11-08 00:02:06 +00:00
ghemical Update to 3.0.0. 2013-01-08 10:50:11 +00:00
ghmm
gnudatalanguage - remove an obsoleted dependency on py-numarray; 2013-01-05 14:28:32 +00:00
gramps Hand over port to new volunteer. 2012-11-02 14:26:22 +00:00
gromacs - Update to 4.6 2013-02-10 07:56:49 +00:00
gsmc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gsystem - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
gtamsanalyzer - reset MAINTAINER 2012-06-26 05:44:19 +00:00
gwyddion - Chase lib version changes from ilmbase and OpenEXR updates 2013-01-17 16:05:38 +00:00
h5utils - update png to 1.5.10 2012-06-01 05:26:28 +00:00
harminv
hdf - Update to 4.2.8. 2012-12-20 05:41:13 +00:00
hdf-java Convert to new option framework 2012-12-13 10:47:44 +00:00
hdf5
hdf5-18 - Update to 1.8.9 2012-06-06 16:45:22 +00:00
hs-bio - Fix breakage in the DYNAMIC-enabled ports triggered by the recent 2013-02-05 22:26:31 +00:00
InsightToolkit
isaac-cfd
jmol Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
jstrack - update to 3.3.4 (old version isn't fetchable anymore) 2012-11-08 11:40:29 +00:00
kalzium KDE/FreeBSD team presents KDE SC 4.9.5 ports! 2013-02-03 20:10:37 +00:00
kmovisto - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst2 Update to 2.0.6 2012-10-11 11:25:19 +00:00
lamprop
libctl
libghemical * Update to 3.0.0. 2013-01-08 06:53:51 +00:00
libint
libkml Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
liblinear
liboglappth update to 1.0.0. 2013-01-08 07:13:23 +00:00
libquantum
libsvm
libsvm-python
linsmith - Fix build with clang 2013-02-07 14:36:55 +00:00
massxpert - Update to 3.4.0 2013-02-09 14:02:02 +00:00
mayavi - update png to 1.5.10 2012-06-01 05:26:28 +00:00
mbdyn add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate 2012-07-09 11:11:44 +00:00
mcstas - Remove SITE_PERL from *_DEPENDS 2012-06-30 14:53:22 +00:00
medit Upgrade to 2012.02.05. 2012-11-22 21:39:32 +00:00
meep Replace USE_GCC=4.5+ by USE_GCC=4.6+ which has been transparently 2012-04-07 15:31:51 +00:00
mei MEI stands for Mathematical Expression Interpreter. 2012-07-07 15:15:08 +00:00
minc Update to version 1.5.1 [1] 2012-07-20 16:32:07 +00:00
minc2 Update to version 2.0.18 [1] 2012-07-20 16:33:32 +00:00
mol2ps - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
mpb
mpqc Fix recent build on tinderbox. Somehow "sc_PsiCCSD_T.3" is not 2013-01-08 04:49:03 +00:00
mpqc-mpich Fix the two affected ports 2012-02-10 09:33:05 +00:00
ncs Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update. 2013-02-03 18:16:54 +00:00
netcdf
netcdf-ftn
netcdf3-ftn
netcdf4
nifticlib - Fix typos in COMMENT 2012-08-02 09:02:43 +00:00
omnetpp - update png to 1.5.10 2012-06-01 05:26:28 +00:00
openbabel science/openbabel: 2012-12-11 14:19:54 +00:00
ovt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight - Assign clsung's p5- ports to perl@ 2012-05-01 01:47:10 +00:00
p5-Chemistry-3DBuilder - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Chemistry-File-SLN - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol - Trim Makefile headers 2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol - Trim Makefile headers 2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Geo-BUFR - Update to 1.21 2012-02-08 07:25:19 +00:00
p5-Geo-Coordinates-Converter Cleanup supporting perl version 5.8 and 5.10, 2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.011. 2013-01-29 08:50:49 +00:00
p5-PerlMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Physics-Unit - Update to 0.53 2012-05-26 07:29:57 +00:00
paje - reset MAINTAINER 2012-06-26 05:44:19 +00:00
paraview - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
peekabot Chase boost update 2013-01-31 13:38:42 +00:00
pnetcdf - Update to 1.3.1 2012-09-30 04:19:04 +00:00
psi3 - Fix all cases of 'No newline at end of file' in ports tree 2013-02-01 15:04:00 +00:00
psychopy - Update to 1.75.01 2013-01-15 06:22:00 +00:00
py-biolccc Update to 1.4.0 2012-05-13 12:20:54 +00:00
py-DendroPy Update to 3.12.0 2012-07-18 06:21:15 +00:00
py-h5py
py-hcluster - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-mdp - Update to 3.2 2012-08-08 21:27:15 +00:00
py-mlpy At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-netCDF4 - Update to 1.0.2 2012-11-27 03:28:28 +00:00
py-obspy-core - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.db - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.gse2 - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.imaging - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.iris - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.mseed - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.signal - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.taup - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.wav - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.xseed - Update to 0.7.0 2012-10-10 06:25:58 +00:00
py-paida
py-pydicom Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
py-scikit-learn Fix dep. 2012-11-08 11:37:48 +00:00
py-scimath At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-scipy - update to 0.11.0 2012-10-17 06:15:16 +00:00
py-ws2300 - Update to 1.7 [1] 2012-12-09 13:19:39 +00:00
pybrain
pycdf At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
pynn - Update to version 0.7.4 2012-11-30 23:50:36 +00:00
qcl
qtresistors - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
R-cran-AMORE update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
R-cran-bayesm update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
R-cran-DCluster - Update to 0.2-6 2013-01-08 12:39:31 +00:00
R-cran-e1071 update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
R-cran-eco update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
R-cran-Epi - Update to 1.1.44 2013-02-09 01:30:13 +00:00
R-cran-epicalc update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
R-cran-snow update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
R-cran-som update the R base ports to 2.15.2 and adjust dependent ports 2013-01-04 17:51:39 +00:00
ruby-dcl - Update to 1.7.0. 2012-07-25 01:23:45 +00:00
ruby-gphys - Update to 1.2.2 2013-01-22 03:31:11 +00:00
ruby-netcdf - update to 0.6.6 2012-03-08 04:34:40 +00:00
rubygem-ai4r
silo - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
simlib
step KDE/FreeBSD team presents KDE SC 4.9.5 ports! 2013-02-03 20:10:37 +00:00
svmlight
szip - Update distinfo because distfile was rerolled upstream [1] 2012-02-04 07:44:50 +00:00
udunits - Remove unnecessary USE_PERL5 2012-05-06 09:35:33 +00:00
v_sim science/openbabel: 2012-12-11 14:19:54 +00:00
veusz Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update. 2013-02-03 18:16:54 +00:00
vmd Update to 1.9.1. 2012-04-23 04:48:03 +00:00
x11iraf Register CONFLICTS 2012-06-11 09:52:17 +00:00
xmakemol Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
xmds
Makefile japanese/vflib||2013-02-06|Has expired: No more public distfiles 2013-02-06 07:46:43 +00:00