32 lines
833 B
Makefile
32 lines
833 B
Makefile
PORTNAME= TrimGalore
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DISTVERSION= 0.6.5
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CATEGORIES= biology perl5 python
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PKGNAMEPREFIX= p5-
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Wrapper around Cutadapt and FastQC for adapter and quality trimming
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE
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RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>=2.5:biology/py-cutadapt@${PY_FLAVOR} \
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fastqc>0:biology/fastqc
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# Future: Can 3.4+ be determined from cutadapt dep?
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USES= perl5 python:env,3.4+ shebangfix
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USE_PERL5= run
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USE_GITHUB= yes
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SHEBANG_FILES= trim_galore
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GH_ACCOUNT= FelixKrueger
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NO_ARCH= yes
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NO_BUILD= yes
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SUB_FILES= trim_galore-test
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do-install:
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${INSTALL_SCRIPT} ${WRKSRC}/trim_galore ${STAGEDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${WRKDIR}/trim_galore-test ${STAGEDIR}${PREFIX}/bin
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cd ${WRKSRC} && ${COPYTREE_SHARE} test_files ${STAGEDIR}${DATADIR}
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.include <bsd.port.mk>
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