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freebsd-ports/biology
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Baptiste Daroussin da6c3af5fc Deprecate a bunch of ports that are either abandonware and/or for which no more 
public distfiles are available, or for which are -devel version with a more
recent stable version for long

Feature safe:	yes
2012-10-26 14:57:50 +00:00
..
adun - reset MAINTAINER 2012-06-26 05:44:19 +00:00
ariadne - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
artemis - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
avida - Update to version 2.12.3 2012-06-17 20:04:32 +00:00
babel Fix build with clang 2012-08-24 10:18:51 +00:00
belvu Deprecate a bunch of ports that are either abandonware and/or for which no more 2012-10-26 14:57:50 +00:00
biococoa - cleanup comments 2012-10-13 13:39:56 +00:00
biojava Fix typos in COMMENT 2012-07-29 11:17:02 +00:00
blast - Take maintainership 2012-10-01 14:55:55 +00:00
blat - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
boinc-simap - Adjust BOINC_* variables to be consistent with new system in boinc-client 2012-05-16 13:46:30 +00:00
chemeq
clustalw
consed
crux Does not build on powerpc-9: error in pthreads. 2011-11-10 14:30:51 +00:00
dotter - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
embassy - Take maintainership 2012-10-01 14:55:55 +00:00
emboss - Take maintainership 2012-10-01 14:55:55 +00:00
fasta
fasta3 - Take maintainership 2012-10-01 14:55:55 +00:00
fastdnaml
finchtv - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
fluctuate
garlic Fix typos in COMMENT 2012-07-25 06:32:06 +00:00
genpak - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gff2ps - Update MASTER_SITES and WWW: line 2012-02-19 23:24:52 +00:00
gmap
gperiodic - update png to 1.5.10 2012-06-01 05:26:28 +00:00
grappa
hmmer - Take maintainership 2012-10-01 14:55:55 +00:00
iolib - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
jalview - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
lagan - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
lamarc - Update to version 2.1.8 2012-06-17 20:22:32 +00:00
libgenome
libsbml
linux-foldingathome
mafft Mark as broken on sparc64: depends on thread-local storage, which is not 2012-09-08 08:30:39 +00:00
mapm3
migrate
molden Mea culpa, s/Whom/Created by/ 2012-09-23 15:40:58 +00:00
mopac
mrbayes
mummer - Update to 3.23 2012-01-17 00:51:39 +00:00
muscle Fix typos in COMMENT 2012-07-24 07:19:21 +00:00
ncbi-toolkit - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
njplot s/X11BASE/LOCALBASE/, or equivalent. 2012-06-24 21:53:38 +00:00
ortep3
p5-AcePerl - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3 Fix typos in COMMENT 2012-07-25 06:32:06 +00:00
p5-Bio-Glite At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Bio-Graphics - Update to 2.29 2012-06-18 09:30:35 +00:00
p5-Bio-MAGETAB - Update to 1.26 2012-10-25 00:18:32 +00:00
p5-Bio-NEXUS - Update to 0.78 2012-02-11 02:04:41 +00:00
p5-Bio-Phylo - Update to 0.50 2012-06-12 18:55:28 +00:00
p5-Bio-SCF At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-bioperl - Take maintainership 2012-10-01 14:55:55 +00:00
p5-bioperl-run - Remove SITE_PERL from *_DEPENDS 2012-06-30 14:53:22 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml
platon
plink Add new ports biology/plink [1] and biology/plinkseq [2]: 2012-09-27 09:59:25 +00:00
plinkseq Add new ports biology/plink [1] and biology/plinkseq [2]: 2012-09-27 09:59:25 +00:00
povchem - update png to 1.5.10 2012-06-01 05:26:28 +00:00
primer3 - Take maintainership 2012-10-01 14:55:55 +00:00
protomol Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
psi88
py-biopython - update to 1.60 2012-09-25 08:06:42 +00:00
pycogent - Update to 1.5.3 2012-10-08 03:17:02 +00:00
pyfasta - Update to 0.4.5 2012-02-23 13:43:25 +00:00
pymol Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
python-nexus - Update to 0.87 2011-12-23 08:05:00 +00:00
rasmol
recombine
ruby-bio
seaview - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
seqan Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out. 2012-07-21 22:20:32 +00:00
seqio
sim4
ssaha - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
t_coffee - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
tinker
treepuzzle
treeviewx - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
tRNAscan-SE
velvet
wise
xdrawchem - update png to 1.5.10 2012-06-01 05:26:28 +00:00
xmolwt
Makefile 2012-10-20 chinese/wangttf: No more public distfiles 2012-10-25 23:05:56 +00:00