9cae6c02e4
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. WWW: http://transdecoder.github.io/ PR: 207993 Submitted by: Jason Bacon <bacon4000@gmail.com>
32 lines
1.4 KiB
Text
32 lines
1.4 KiB
Text
bin/TransDecoder.LongOrfs
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bin/TransDecoder.LongOrfs.bak
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bin/TransDecoder.Predict
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bin/TransDecoder.Predict.bak
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%%SITE_PERL%%/transdecoder/Fasta_reader.pm
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%%SITE_PERL%%/transdecoder/Fasta_retriever.pm
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%%SITE_PERL%%/transdecoder/GFF3_utils.pm
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%%SITE_PERL%%/transdecoder/Gene_obj.pm
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%%SITE_PERL%%/transdecoder/Gene_obj_indexer.pm
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%%SITE_PERL%%/transdecoder/Longest_orf.pm
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%%SITE_PERL%%/transdecoder/Nuc_translator.pm
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%%SITE_PERL%%/transdecoder/TiedHash.pm
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libexec/transdecoder/cdna_alignment_orf_to_genome_orf.pl
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libexec/transdecoder/compute_base_probs.pl
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libexec/transdecoder/create_start_PSSM.pl
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libexec/transdecoder/cufflinks_gtf_genome_to_cdna_fasta.pl
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libexec/transdecoder/cufflinks_gtf_to_alignment_gff3.pl
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libexec/transdecoder/cufflinks_gtf_to_bed.pl
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libexec/transdecoder/extract_FL_subset.pl
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libexec/transdecoder/ffindex_resume.pl
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libexec/transdecoder/gene_list_to_gff.pl
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libexec/transdecoder/get_FL_accs.pl
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libexec/transdecoder/get_longest_ORF_per_transcript.pl
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libexec/transdecoder/get_top_longest_fasta_entries.pl
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libexec/transdecoder/gff3_file_to_bed.pl
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libexec/transdecoder/gff3_file_to_proteins.pl
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libexec/transdecoder/index_gff3_files_by_isoform.pl
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libexec/transdecoder/nr_ORFs_gff3.pl
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libexec/transdecoder/pfam_runner.pl
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libexec/transdecoder/remove_eclipsed_ORFs.pl
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libexec/transdecoder/score_CDS_liklihood_all_6_frames.pl
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libexec/transdecoder/seq_n_baseprobs_to_logliklihood_vals.pl
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