57 lines
1.6 KiB
Makefile
57 lines
1.6 KiB
Makefile
# New ports collection makefile for: t_coffee
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# Date created: 27 June 2001
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# Whom: Johann Visagie <wjv@FreeBSD.org>
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#
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# $FreeBSD$
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#
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PORTNAME= t_coffee
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PORTVERSION= 1.37
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CATEGORIES= biology
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MASTER_SITES= http://igs-server.cnrs-mrs.fr/~cnotred/Packages/
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DISTNAME= T-COFFEE_distribution
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MAINTAINER= wjv@FreeBSD.org
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COMMENT= A multiple DNA or protein sequence alignment package
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BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw
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RUN_DEPENDS= ${BUILD_DEPENDS}
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WRKSRC= ${WRKDIR}/${DISTNAME}_Version_${PORTVERSION}
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BUILD_WRKSRC= ${WRKSRC}/t_coffee_source
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MAKE_ENV= MV=${MV} USER_BIN=${LOCALBASE}/bin \
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CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw
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MAKEFILE= makefile
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PKGMESSAGE= ${WRKDIR}/pkg-message
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post-build:
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@ cd ${WRKSRC}/lalign && ${SETENV} ${MAKE_ENV} ${MAKE} \
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${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET}
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.include <bsd.port.pre.mk>
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do-install:
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.for binfile in t_coffee_source/t_coffee lalign/lalign2list
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@ ${INSTALL_PROGRAM} ${WRKSRC}/${binfile} ${PREFIX}/bin
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.endfor
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.for scriptfile in extract_from_pdb mocca
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@ ${INSTALL_SCRIPT} ${WRKSRC}/bin/${scriptfile} ${PREFIX}/bin
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.endfor
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post-install:
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@ ${MKDIR} ${DATADIR}
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@ ${INSTALL_DATA} ${WRKSRC}/html/* ${DATADIR}
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.if !defined(NOPORTDOCS)
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@ ${MKDIR} ${DOCSDIR}
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@ ${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR}
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@ ${MKDIR} ${EXAMPLESDIR}
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@ ${RMDIR} ${WRKSRC}/example/aln 2>/dev/null || ${TRUE}
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@ cd ${WRKSRC}/example && ${FIND} * \
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| ${CPIO} --quiet -pdum -R ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR}
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@ ${SED} -e 's#%%DATADIR%%#${DATADIR}#' ${.CURDIR}/pkg-message \
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> ${PKGMESSAGE}
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.if !defined(BATCH)
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@ ${CAT} ${PKGMESSAGE}
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.endif
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.endif
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.include <bsd.port.post.mk>
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