3be3e90f93
- Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery)
46 lines
1,005 B
Makefile
46 lines
1,005 B
Makefile
# Created by: Jason Evans <jasone@FreeBSD.org>
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# $FreeBSD$
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PORTNAME= crux
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PORTVERSION= 1.2.0
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PORTREVISION= 2
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CATEGORIES= biology python
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MASTER_SITES= http://www.canonware.com/download/Crux/
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MAINTAINER= jasone@FreeBSD.org
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COMMENT= Software toolkit for phylogenetic inference
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USE_BZIP2= yes
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --with-python=${PYTHON_CMD} --disable-mpi
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USE_CSTD= gnu99
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USE_GMAKE= yes
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USE_PYTHON= 2.5+
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OPTIONS_DEFINE= SYS_LINALG
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SYS_LINALG_DESC= Enable system ATLAS/LAPACK
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NO_STAGE= yes
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.include <bsd.port.pre.mk>
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CPPFLAGS+= -I${LOCALBASE}/include
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LDFLAGS+= -L${LOCALBASE}/lib
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USE_FORTRAN= yes
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.include <bsd.port.options.mk>
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.if ${PORT_OPTIONS:MSYS_LINALG}
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CONFIGURE_ARGS+= --enable-sys-linalg
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LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
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.else
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CONFIGURE_ARGS+= --disable-sys-linalg
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.endif
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.if ${ARCH} == "powerpc" && ${OSVERSION} > 900000
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BROKEN= Does not build on powerpc-9: error in pthreads
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.endif
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post-install:
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@${PREFIX}/bin/crux -b -q /dev/null
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.include <bsd.port.post.mk>
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