c58c954676
- Remove MD5 PR: ports/153394 Submitted by: myself (pgollucci) Approved by: mauricio@arareko.net (maintainer) Sponsored by: RideCharge Inc. / TaxiMagic
67 lines
2 KiB
Makefile
67 lines
2 KiB
Makefile
# New ports collection makefile for: BioRuby
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# Date created: 24 October 2001
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# Whom: Akinori MUSHA aka knu <knu@idaemons.org>
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#
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# $FreeBSD$
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#
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PORTNAME= bio
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PORTVERSION= 1.4.1
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CATEGORIES= biology ruby
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MASTER_SITES= http://bioruby.org/archive/
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PKGNAMEPREFIX= ${RUBY_PKGNAMEPREFIX}
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DISTNAME= ${PORTNAME}ruby-${PORTVERSION}
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DIST_SUBDIR= ruby
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MAINTAINER= mauricio@arareko.net
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COMMENT= Integrated environment for Bioinformatics written in Ruby
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OPTIONS= XMLPARSER "xmlparser support for faster Blast processing" off \
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BDB4 "bdb4 support for faster flat file indexing" off \
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MYSQL "MySQL database support for BioSQL" off \
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PGSQL "PostgreSQL database support for BioSQL" off
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OPTIONSFILE= ${PORT_DBDIR}/ruby-${PORTNAME}/options
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USE_RUBY= yes
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USE_RUBY_SETUP= yes
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.include <bsd.port.pre.mk>
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.if defined(WITH_XMLPARSER)
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RUN_DEPENDS+= ${RUBY_SITEARCHLIBDIR}/xmlparser.so:${PORTSDIR}/textproc/ruby-xmlparser
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.endif
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.if defined(WITH_BDB4)
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RUN_DEPENDS+= ${RUBY_SITEARCHLIBDIR}/bdb.so:${PORTSDIR}/databases/ruby-bdb
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.endif
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.if defined(WITH_MYSQL)
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RUN_DEPENDS+= ${RUBY_SITELIBDIR}/DBD/Mysql/Mysql.rb:${PORTSDIR}/databases/ruby-dbd_mysql
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.endif
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.if defined(WITH_PGSQL)
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RUN_DEPENDS+= ${RUBY_SITELIBDIR}/DBD/Pg/Pg.rb:${PORTSDIR}/databases/ruby-dbd_pg
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.endif
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post-patch:
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${RUBY} -i -pe 'gsub(%r"(/etc/bioinformatics/)") { "${PREFIX}" + $$1 }' \
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${WRKSRC}/doc/Tutorial.rd \
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${WRKSRC}/lib/bio/io/registry.rb
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do-install:
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${MKDIR} ${PREFIX}/etc/bioinformatics
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.for f in etc/bioinformatics/seqdatabase.ini
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${INSTALL_DATA} ${WRKSRC}/${f} ${PREFIX}/${f}.sample
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if [ ! -f ${PREFIX}/${f} ]; then \
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${CP} -p ${PREFIX}/${f}.sample ${PREFIX}/${f}; \
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fi
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.endfor
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.if !defined(NOPORTEXAMPLES)
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${MKDIR} ${RUBY_MODEXAMPLESDIR}
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${CP} -R ${WRKSRC}/sample/ ${RUBY_MODEXAMPLESDIR}/
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.endif
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.if !defined(NOPORTDOCS)
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${MKDIR} ${RUBY_MODDOCDIR}/ja
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${INSTALL_DATA} ${WRKSRC}/ChangeLog ${WRKSRC}/README.rdoc ${RUBY_MODDOCDIR}/
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${INSTALL_DATA} ${WRKSRC}/doc/*.rd ${RUBY_MODDOCDIR}/
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${INSTALL_DATA} ${WRKSRC}/doc/*.rd.ja ${RUBY_MODDOCDIR}/ja/
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.endif
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.include <bsd.port.post.mk>
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