Yuri Victorovich 1d5163c9b6 devel/gradle: Update to 5.0 ... Change biology/igv and biology/gatk to gradle4 due to build failures with gradle5. PR: 233623 Approved by: gasol.wu@gmail.com (maintainer)		2018-12-04 17:53:46 +00:00
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artemis
avida
babel
bamtools
bcftools
bedtools
biococoa
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
chemeq
clustal-omega
clustalw
clustalx
consed
cytoscape
ddocent
diamond
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastqc
fasttree
fastx-toolkit
fluctuate
freebayes
garlic
gatk	devel/gradle: Update to 5.0	2018-12-04 17:53:46 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer
htslib
hyphy
igv	devel/gradle: Update to 5.0	2018-12-04 17:53:46 +00:00
infernal
iolib
iqtree
jalview
jellyfish
kallisto
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-toolkit
ngs-sdk
njplot
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbcopper
pbseqan
pear-merger
phrap
phred
phylip
phyml
plinkseq
primer3
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-loompy
py-macs2
py-orange3-bioinformatics
py-orange3-single-cell
py-pyfaidx
py-pysam
pycogent
pyfasta
python-nexus
rainbow
recombine
ruby-bio
rubygem-bio
samtools
seaview
seqan
seqan-apps
seqan1
seqio
seqtk
seqtools
sim4
slclust
smithwaterman
stacks
stringtie
t_coffee
tabixpp
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene
unanimity
vcflib
vcftools
velvet
wise
xmolwt
Makefile