04d6f52202
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms). This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using using Mk/bsd.octave.mk which in turn has USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang, c++11-lang, c++0x, c11, or gcc-c++11-lib. PR: 216707
38 lines
795 B
Makefile
38 lines
795 B
Makefile
# Created by: Jason Bacon <bacon4000@gmail.com>
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# $FreeBSD$
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PORTNAME= cd-hit
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PORTVERSION= 4.6.6
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PORTREVISION= 1
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DISTVERSIONPREFIX= V
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CATEGORIES= biology
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MAINTAINER= bacon4000@gmail.com
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COMMENT= Clustering and comparing protein or nucleotide sequences
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LICENSE= GPLv2
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USE_GITHUB= yes
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GH_ACCOUNT= weizhongli
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GH_PROJECT= cdhit
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USES= compiler:openmp gmake shebangfix
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SHEBANG_FILES= ${WRKSRC}/*.pl
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MAKE_FLAGS= openmp=yes
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post-patch:
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@${REINPLACE_CMD} \
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-e 's|g++|${CXX}|g' \
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-e 's|\$$(PREFIX)|$${DESTDIR}$${PREFIX}/bin|g' \
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${WRKSRC}/${MAKEFILE}
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@${REINPLACE_CMD} \
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-e 's|/bin/bash|${LOCALBASE}/bin/bash|g' \
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${WRKSRC}/*.pl
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post-install:
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@cd ${STAGEDIR}${PREFIX}/bin && \
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${STRIP_CMD} cd-hit cd-hit-2d cd-hit-454 \
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cd-hit-div cd-hit-est cd-hit-est-2d
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.include <bsd.port.mk>
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