35 lines
1.1 KiB
Text
35 lines
1.1 KiB
Text
--- Makefile.orig Sat Oct 7 00:16:41 2000
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+++ Makefile Thu Dec 20 17:26:37 2001
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@@ -19,10 +19,11 @@
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## (this could be 'perl5' or otherwise on some systems)
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PERLBIN = perl
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+prefix = ${PREFIX}
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## where you want things installed
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-BINDIR = $(HOME)/bin
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-LIBDIR = $(HOME)/lib/tRNAscan-SE
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-MANDIR = $(HOME)/man
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+BINDIR = $(prefix)/bin
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+LIBDIR = $(prefix)/share/tRNAscan-SE
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+MANDIR = $(prefix)/man
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## NOTE !! If you later manually move the location of
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## binaries or data files in the BINDIR or LIBDIR directories,
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@@ -106,7 +107,7 @@
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MPOBJ = mpviterbi.o mp-dbviterbi.o
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-all: $(PROGS) tRNAscanSE setpaths
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+all: $(PROGS) tRNAscanSE
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covels-SE: $(OBJ) scan_main.o
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$(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
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@@ -178,7 +179,7 @@
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@echo ""
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@rm -f testrun.out
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@echo "tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa"
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- @if tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \
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+ @if ./tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \
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then echo ""; \
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else echo "tRNAscan-SE did NOT complete properly."; fi
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@if diff testrun.out testrun.ref; \
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