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Robert Clausecker cb127c6a8d science/chemtool-devel: Fix build on FreeBSD 13.1R and 14 
- Same fix as 4bfc3a9 for science/chemtool.
 - While we are at it, define LICENSE.  The license is not
   shipped, but from the README it is clearly the authors
   intent to have the same license as for science/chemtool.

while I'm here:

 - cleanup Makefile
 - remove unnecessary patch and reinplace cmd
 - add EXAMPLES option
 - add missing LIB_DEPENDS and USE_GNOME deps (Q/A check)
 - adopt port

PR:		265614
2022-08-04 14:37:25 +01:00
..
2d-rewriter science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
abinit science/abinit: Update 9.4.2 -> 9.6.2 2022-07-29 12:57:36 -07:00
afni science/afni: update to 22.2.04 2022-08-02 07:31:26 +02:00
agrum science/agrum: Update 1.1.1 -> 1.2.0 2022-07-29 01:08:49 -07:00
aircraft-datcom
ALPSCore science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
antioch math/gsl: bump portrevision of consumers after update to 2.7.1 2022-01-12 20:41:22 +01:00
apbs
ascent science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
atompaw science/atompaw: Update 4.2.0.0 -> 4.2.0.1 2022-06-13 20:26:14 -07:00
avogadro2 science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
avogadrolibs science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
axom science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
bagel science/bagel: Update 1.2.2 -> 1.2.2-132 2022-06-23 00:39:22 -07:00
bddsolve science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
berkeleygw science/berkeleygw: Improve BROKEN line 2022-07-19 19:27:06 -07:00
bodr science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
buddy science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
cantera science/cantera: Minor simplification 2022-06-29 01:21:31 -07:00
cdcl science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
cdf science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
cdk science/cdk: Update 2.3 -> 2.7.1 2022-06-03 09:49:16 -07:00
cdo science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
cgnslib science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
cgribex science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
checkmol science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
chemical-mime-data science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
chemicalfun science/chemicalfun: Update g20220104 -> 0.1.3 2022-07-17 13:04:09 -07:00
chemps2 science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
chemtool science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
chemtool-devel science/chemtool-devel: Fix build on FreeBSD 13.1R and 14 2022-08-04 14:37:25 +01:00
chimes-calculator science/chimes-calculator: New port: Chebyshev Interaction Model for Efficient Simulation 2022-01-18 23:05:13 -08:00
ChipmunkPhysics science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
chrono science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
clhep science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
clipper
code_saturne science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
colt science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
conduit science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
coordgenlibs science/coordgenlibs: Update 2.0.3 -> 3.0.0 2021-09-09 13:00:09 -07:00
cp2k science/cp2k: Broken on systems where OpenMP isn't enabled 2022-07-24 19:05:43 -07:00
cp2k-data science/cp2k-data: Update 9.1.0 -> 2022.1 2022-07-11 21:10:07 -07:00
crf++ science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
csvtk all: Bump PORTREVISION after Go update 2022-08-03 16:35:13 -05:00
dakota science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
dalton
dcl science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
devisor science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
dftbplus textproc/toml-f: Update 0.2.3 -> 0.3.0 2022-08-03 10:30:41 -07:00
dftd4 science/dftd4: Update 3.3.0 -> 3.4.0 2022-04-30 12:48:30 -07:00
dkh
dlib-cpp
drawxtl graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
dvc
dynare science/dynare: Update 5.1 -> 5.2 2022-07-28 17:21:33 -07:00
eccodes science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
elk science/elk: Update 8.4.21 -> 8.4.30 2022-07-05 15:30:25 -07:00
elmerfem science/elmerfem: Fix bug that build selected arbitrary Python versions 2022-07-21 10:20:30 -07:00
epte science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
erd
ergo Fix CONFLICTS entries of multiple ports 2022-01-10 16:15:39 +01:00
erkale science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
erkale-pseudopotentials science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405 2022-05-24 12:51:17 -07:00
fastcap science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
fasthenry science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
fastjet science/fastjet: Fix CGAL option; Add tests 2022-07-07 10:16:49 -07:00
fisicalab math/gsl: bump portrevision of consumers after update to 2.7.1 2022-01-12 20:41:22 +01:00
fleur science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
frontistr science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
fsom
fvcom science/netcdf-fortran: Update to 4.5.4 2022-03-08 02:10:59 +08:00
fvcom-mpi *: Clean up some things 2021-10-12 17:01:38 +02:00
gabedit science/gabedit: Improve BROKEN lines and options 2022-07-20 12:21:45 -07:00
gamess-us
gbtolib science/gbtolib: Add FFLAGS=-fdefault-integer-8 2022-08-03 01:40:49 -07:00
gchemutils science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
gdma
getdp science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
ghemical science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
ghmm science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
gnudatalanguage science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
gpaw-setups
gramps science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
grib_api science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
gromacs science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
gsmc science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
gtamsanalyzer science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
h5utils science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
h5z-zfp science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
harminv science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
hdf science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
hdf5 science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
hdf5-18 science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
hdf5-110 science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
healpix astro/cfitsio: Update to 4.0.0 2022-02-28 23:06:56 +08:00
helfem science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
hepmc3 science/hepmc3: Update 3.2.4 -> 3.2.5 2022-05-12 11:57:53 -07:00
highfive science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
hypre science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
iboview science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
InsightToolkit science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
isaac-cfd science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
jdftx science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
jmol science/jmol: Update 14.32.63 -> 14.32.66 2022-07-31 21:52:17 -07:00
jstrack science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
kalzium KDE: Update KDE Gear to 22.04.3 2022-07-07 23:49:42 +02:00
kim-api science/kim-api: Update 2.2.1 -> 2.3.0 2022-03-19 18:18:45 -07:00
kplib science/kplib: Remove -march=native to fix build on some architectures 2022-07-23 13:24:58 -07:00
kst2 science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
lammps science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
lamprop
latte
libaec science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libccp4
libcint science/libcint: Update 5.1.2 -> 5.1.3 2022-06-16 11:24:43 -07:00
libctl science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libecpint science/libecpint: Update 1.0.6 -> 1.0.7 2021-12-14 14:41:53 -08:00
libefp
libgeodecomp science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libgetar science/libgetar: New port: Library to read and write GEneric Trajectory ARchives 2022-06-27 10:58:02 -07:00
libghemical science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libgridxc
libint science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libint2 science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libkml science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
liblinear science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libmbd science/libmbd: Update 0.12.4 -> 0.12.5 2022-08-03 10:30:42 -07:00
libmsym
libnegf science/libnegf: Update 1.0.3 -> 1.1.2 2022-05-18 13:51:37 -07:00
liboglappth science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libquantum science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libssm
libsvm science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libsvm-python science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
libtensorflow1 science/libtensorflow1: mark BROKEN: tries to fetch during the build 2022-07-21 17:31:12 +03:00
libvdwxc
libxc science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
liggghts science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
linux-zotero science/linux-zotero: Commit zotero.desktop patches & fix Exec 2022-07-29 15:21:06 +02:00
luscus graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
madness
maeparser devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
massxpert science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
mbdyn science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
mcstas
mcstas-comps science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
mctc-lib science/mctc-lib: Update 0.3.0 -> 0.3.1 2022-08-03 10:30:42 -07:00
mcxtrace */*: fix trailing whitespace in pkg-descr's 2022-04-01 18:09:49 +03:00
mcxtrace-comps
mdynamix */*: fix trailing whitespace in pkg-descr's 2022-04-01 18:09:49 +03:00
medit science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
meep science/meep: Fix build on i386 2022-07-27 01:31:14 -07:00
metaphysicl science/metaphysicl: Update 1.3.2 -> 1.3.3 2021-12-13 09:19:09 -08:00
minc2 science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
mmdb2 science/mmdb2: Update 2.0.20 -> 2.0.22 2022-04-30 09:03:26 -07:00
mmtf-cpp
mol2ps science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
molgif all: Bump PORTREVISION after Go update 2022-08-03 16:35:13 -05:00
molscript graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
molsketch
mopac science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
mpb science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
mpqc science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
msms Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
mstore */*: In 7 ports remove GNU-10.3.0 from install paths 2022-01-18 12:12:05 -08:00
multicharge science/multicharge: Update 0.1.2 -> 0.2.0 2022-05-05 23:21:10 -07:00
multiwfn
namd Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
nest science/nest: remove redundant USES=compiler 2022-05-31 03:06:02 +00:00
netcdf science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
netcdf-cxx science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
netcdf-fortran science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
nifticlib */*: Remove redundant '-[0-9]*' from CONFLICTS 2021-10-29 11:50:18 +02:00
nwchem science/nwchem: Update 7.0.2.20211110 -> 7.0.2.20220224 2022-02-25 10:19:33 -08:00
nwchem-data
octopus science/octopus: Cosmetic changes 2022-05-31 02:12:09 -07:00
openbabel science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
openems science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
openkim
openkim-models science/openkim-models: Update 2021-01-28 -> 2021-08-11 2022-05-08 11:02:07 -07:00
openmc science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
openmolcas science/openmolcas: Update 22.02 -> 22.06 2022-07-26 10:05:36 -07:00
openmx science/openmx: Cleanup - remove unnecessary lines 2021-09-05 10:00:44 -07:00
opensim-core graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
opensph science/opensph: Update 0.3.8 -> 0.4.0 2022-08-01 00:42:56 -07:00
opsin
orthanc science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
orthanc-dicomweb science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
orthanc-mysql science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
orthanc-postgresql science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
orthanc-webviewer science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Algorithm-SVMLight science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-3DBuilder science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Bond-Find science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Canonicalize science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Elements science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-MDLMol science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-Mopac science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-PDB science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-SLN science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-SMARTS science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-SMILES science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-VRML science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-File-XYZ science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-FormulaPattern science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-InternalCoords science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Isotope science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-MacroMol science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-MidasPattern science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Mok science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Mol science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Pattern science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Reaction science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Chemistry-Ring science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Geo-BUFR science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Geo-Coordinates-Converter science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Geo-Coordinates-Converter-iArea science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Geo-WebService-Elevation-USGS science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Mcstas-Tools
p5-PerlMol science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
p5-Physics-Unit science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
packmol
pagmo2 devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
paje science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
paraview science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
pastix science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
pcmsolver science/pcmsolver: Remove CMAKE_EXE_LINKER_FLAGS from cmake configure arguments 2022-07-17 13:48:20 -07:00
PETSc science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
phonopy science/phonopy: Update 2.15.0 -> 2.15.1 2022-05-28 21:52:24 -07:00
plumed science/plumed: Use upsteam release archive 2022-05-23 13:39:54 +02:00
pnetcdf science/pnetcdf: Fix build on i386 2022-07-31 03:24:09 +08:00
precice science/precice: Add options; Backport patch provided by upstream 2022-06-21 14:02:33 -07:00
pulseview science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-abipy
py-access science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-asap3 science/py-asap3: Fix python suffix in shared library name 2022-06-29 01:17:56 -07:00
py-asdf science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-asdf-standard science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-asdf-transform-schemas science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-ase science/py-ase: Add test target 2022-06-19 03:01:29 -07:00
py-avogadrolibs science/py-avogadrolibs: Update 1.94.0 -> 1.95.1 2022-02-05 01:44:22 -08:00
py-cdo science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-chainer devel/protobuf: Update to 3.20.0 2022-04-16 12:19:07 +08:00
py-chainer-chemistry
py-chempy science/py-chempy: switch to USES=pytest, fix tests and document failing ones 2022-04-26 20:26:11 +03:00
py-cirq-aqt science/py-cirq-*: Add comments 2022-07-30 10:37:22 -07:00
py-cirq-core science/py-cirq-*: Add comments 2022-07-30 10:37:22 -07:00
py-cirq-google science/py-cirq-*: Add comments 2022-07-30 10:37:22 -07:00
py-cirq-ionq science/py-cirq-*: Add comments 2022-07-30 10:37:22 -07:00
py-cirq-pasqal science/py-cirq-*: Add comments 2022-07-30 10:37:22 -07:00
py-cirq-rigetti science/py-cirq-*: Add comments 2022-07-30 10:37:22 -07:00
py-coards science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-DendroPy science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-dipy science/py-dipy: Update 1.4.1 -> 1.5.0 2022-04-24 12:42:21 -07:00
py-dlib
py-eccodes science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-esda science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-fresnel math/qhull: Renaming ports 2022-02-18 15:15:30 -06:00
py-geolinks science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-geomet science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-geometer science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-geometric
py-gpaw science/py-gpaw: Update 21.6.0 -> 22.1.0 2022-01-13 02:25:40 -08:00
py-GPy science/py-GPy: Broken on systems where OpenMP isn't enabled 2022-07-23 18:18:46 -07:00
py-GPyOpt
py-gsd science/py-gsd: Update 2.5.2 -> 2.5.3 2022-07-29 01:46:45 -07:00
py-h5json
py-h5py science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
py-hiphive science/py-hiphive: Update 1.0 -> 1.1 2022-05-07 10:11:29 -07:00
py-hoomd-blue science/py-hoomd-blue: Update 3.1.0 -> 3.2.0 2022-05-19 19:10:19 -07:00
py-inequality science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-jupyter_jsmol science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-kim-query science/py-kim-query: Update 1.1.0 -> 3.0.0 2022-05-08 11:02:07 -07:00
py-kinematics science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-kliff science/py-kliff: Update 0.3.3 -> 0.4.0 2022-04-29 12:40:02 -07:00
py-kpLib science/py-kpLib: Correct dependencies 2022-07-21 15:34:14 -07:00
py-liac-arff science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-libgetar science/py-libgetar: Fix tests 2022-06-27 15:39:42 -07:00
py-libpysal science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-lifelines
py-MDAnalysis science/py-MDAnalysis*: upgrade to 2.2.0 2022-06-21 19:26:21 +02:00
py-MDAnalysisTests science/py-MDAnalysis*: upgrade to 2.2.0 2022-06-21 19:26:21 +02:00
py-mdp science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-mmtf-python
py-molmod
py-moltemplate science/py-moltemplate: Update 2.20.5 -> 2.20.6 2022-07-01 15:41:38 -07:00
py-netcdf-flattener science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-netCDF4 science/py-netCDF4: Update version 1.5.8=>1.6.0 2022-07-26 10:53:14 -05:00
py-nibabel science/py-nibabel: Update 3.2.1 -> 3.2.2 2022-04-24 12:42:19 -07:00
py-nilearn science/py-nilearn: Add comment 2022-07-15 23:41:57 -07:00
py-obspy science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-oddt science/py-oddt: Not install tests 2022-03-25 10:28:34 -07:00
py-OpenFermion science/py-OpenFermion: Update 1.3.0 -> 1.5.0 2022-07-28 19:20:35 -07:00
py-OpenMC science/{,py-}openmc: Update 0.12.2 -> 0.13.0 2022-05-08 13:55:59 -07:00
py-openpiv science/py-openpiv: update to 0.23.8 2021-11-06 00:17:44 +03:00
py-paida science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-paramz
py-phono3py science/py-phono3py: Remove unnecessary build dependency on math/lapacke 2021-06-08 20:32:22 -07:00
py-phonopy science/py-phonopy: Update 2.14.0 -> 2.15.1 2022-06-05 23:31:07 -07:00
py-PubChemPy science/py-PubChemPy: New port: Simple Python wrapper around the PubChem PUG REST API 2021-07-27 06:16:51 -07:00
py-pupynere science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-py3Dmol science/py-py3Dmol: New port: IPython interface for embedding 3Dmol.js views 2022-06-15 13:56:03 -07:00
py-pyaixi science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-pyberny science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy 2021-10-16 16:56:19 -07:00
py-pycsw science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-pydicom science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-PyFR science/py-PyFR: Update 1.13.0 -> 1.14.0 2022-05-05 23:21:10 -07:00
py-pygeodesy science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-pygeometa science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-pygmo2 devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
py-pyked devel/py-pint: Update to 0.19.1 2022-04-18 07:58:18 +08:00
py-pymatgen science/py-pymatgen: Update 2022.4.26 -> 2022.7.19 2022-07-29 01:08:50 -07:00
py-pymbd science/py-pymbd: New port: Many-body dispersion library 2022-08-03 10:52:01 -07:00
py-pymol science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-PyNE science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
py-pyosf
py-pyprecice science/py-pyprecice: New port: Coupling library for partitioned multi-physics simulations 2022-06-20 09:53:12 -07:00
py-pysal science/py-pysal: Update USES=python 2022-07-31 03:25:02 +08:00
py-pyscf science/py-pyscf: Unbreak fetch 2022-01-12 20:40:22 -08:00
py-pyteomics science/py-pyteomics: Update to 4.5.4 2022-07-30 13:58:16 +08:00
py-qcelemental science/py-qcelemental: Update 0.24.0 -> 0.25.0 2022-06-15 13:56:03 -07:00
py-qcengine devel/py-pint: Update to 0.19.1 2022-04-18 07:58:18 +08:00
py-qspin science/py-qspin: Fix build with setuptools 58.0.0+ 2022-03-25 21:38:19 +08:00
py-quantities science/py-quantities: Update 0.12.5 -> 0.13.0 2022-01-14 08:48:13 -08:00
py-rmf science/{,py-}rmf: Update 1.3.1 -> 1.4 2022-03-11 08:59:47 -08:00
py-rmsd
py-ruffus
py-scikit-fuzzy science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-scikit-learn science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-scikit-optimize science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-scikit-sparse science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-scimath science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-scipy science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-scoria
py-segregation science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-segyio science/py-segyio: switch to USES=pytest and fix tests 2022-04-26 16:46:03 +03:00
py-SimpleSpectral
py-sklearn-pandas science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-skrebate science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-spaghetti science/py-spaghetti: Update to 1.6.6 2022-07-31 03:25:03 +08:00
py-spglib science/{,py-}spglib: Update 1.16.3 -> 1.16.5 2022-05-07 22:27:10 -07:00
py-tensorflow science/py-tensorflow: mark BROKEN 2022-07-21 23:49:19 +03:00
py-thewalrus science/py-thewalrus: New port: Open source library for hafnian calculation 2022-05-31 20:42:38 -07:00
py-tobler science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
py-trainstation science/py-trainstation: New port: Convenient training of linear models 2022-03-07 12:14:14 -08:00
py-veusz science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
pybrain science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
pynn science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
q science/q: New port: Molecular Dynamics (MD) tools 2022-05-23 18:54:08 -07:00
qbox science/qbox: Update 1.74.3 -> 1.74.4 2022-07-20 15:00:05 -07:00
qcl science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
qiskit-aer devel/libfmt: Update to 8.0.0 2021-07-22 02:11:51 +08:00
qmcpack science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
quantum-espresso
quantum-espresso-pseudopotentials
quantum-jet science/quantum-jet: New port: Cross-platform header-only library for simulating quantum circuits 2022-05-31 13:02:18 -07:00
qwalk textproc/libxml2: bump all LIB_DEPENDS consumers 2022-04-10 15:11:41 -04:00
R-cran-AMORE science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-bayesm science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-cmprsk science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-DCluster science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-e1071 science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-eco science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-Epi science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-epicalc science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-etm science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-FAdist science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-fastICA science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-kernlab science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-ks science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-snow science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-som science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
R-cran-udunits2 science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rdkit science/rdkit: Update 2022.03.3 -> 2022.03.4 2022-07-05 20:20:52 -07:00
rmf science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
rubygem-ai4r science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rubygem-cdo science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rubygem-rgeo science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rubygem-rgeo-geojson science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rubygem-rgeo-proj4 science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rubygem-rgeo-shapefile science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rubygem-ruby-dcl science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
rubygem-ruby-netcdf science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
scidavis science/scidavis: tell portscout to ignore old tag 2022-05-10 21:31:45 +03:00
segyio devel/cmake: Update to 3.23.0 2022-05-16 08:49:43 +02:00
shelxle science/shelxle: Update 1.0.1401 -> 1.0.1406 2022-07-05 20:20:52 -07:00
siconos cleanup: drop support for EOL FreeBSD 11.X 2021-09-30 23:23:30 +02:00
siesta science/siesta: unbreak on powerpc* / main 2022-07-04 02:00:31 +02:00
sigrok-cli science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
sigrok-firmware science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
sigrok-firmware-fx2lafw science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
sigrok-firmware-utils science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
silo science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
simbody graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
simgrid science/simgrid: Update 3.28 -> 3.31 2022-07-24 12:15:38 -07:00
simint
simlib science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
simple-dftd3 textproc/toml-f: Update 0.2.3 -> 0.3.0 2022-08-03 10:30:41 -07:00
simsmith science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
smoldyn science/smoldyn: Update 2.67 -> 2.68 2022-07-31 01:12:49 -07:00
sparta science/sparta: Update 7Jan2022 -> 18Jul2022 2022-07-18 19:09:00 -07:00
spglib science/spglib: fix build without libomp 2022-05-31 03:05:56 +00:00
step KDE: Update KDE Gear to 22.04.3 2022-07-07 23:49:42 +02:00
svmlight science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
tblite textproc/toml-f: Update 0.2.3 -> 0.3.0 2022-08-03 10:30:41 -07:00
teem
tfel science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
tfel-edf science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
thermofun science/thermofun: Fix test target 2022-07-18 00:12:23 -07:00
tinker science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
trilinos science/trilinos: Broken on armv6, armv7 2022-07-23 18:39:13 -07:00
udunits science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
ukrmol+ science/ukrmol+: Add FFLAGS=-fdefault-integer-8 to fix tests; Remove WITH_GSL 2022-08-03 01:40:50 -07:00
v_sim science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
vipster graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
vmd science: remove 'Created by' lines 2022-07-20 16:22:51 +02:00
voro++
votca science/hdf5: bump PORTREVISION of consumers 2022-07-20 16:35:24 +02:00
wannier90
wwplot math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
wxmacmolplt graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
xcfun science/xcfun: fix build on GCC-based systems 2021-06-07 06:38:43 -05:00
xcrysden framework: Add new USES 'magick' for graphics/ImageMagick* 2021-12-11 14:50:53 +01:00
xdrawchem graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
xtb science/xtb: Broken on systems where OpenMP isn't enabled 2022-08-04 00:41:23 -07:00
yoda science/yoda: Update 1.9.4 -> 1.9.6 2022-07-31 01:12:48 -07:00
zotero devel/libffi: Bump deps PORTREVISION for shlib change 2022-05-09 12:23:51 -07:00
Makefile science/py-pymbd: New port: Many-body dispersion library 2022-08-03 10:52:01 -07:00