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Kubilay Kocak 8fe00c1ba3 science/py-coards: Modernise and enable STAGE support 
- Remove NO_STAGE= flag
- Use PYDISTUTILS=yes instead of easy_install
- Use AUTOPLIST

PR:		ports/185952
Submitted by:	Johannes Jost Meixner <xmj@chaot.net> (maintainer)
2014-01-26 00:52:15 +00:00
..
2d-rewriter Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
2dhf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
abinit science/abinit: depends explicitly on "python" 2013-12-15 12:49:28 +00:00
afni Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
avogadro - Update from 1.1.0 to 1.1.1 2013-12-18 23:33:20 +00:00
bddsolve Convert LIB_DEPENDS for ports depending on boost 2013-12-12 14:15:03 +00:00
bft Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
bodr - Update to version 10 2013-11-02 17:34:59 +00:00
brian Python cleanup: 2014-01-13 21:00:02 +00:00
buddy Reset maintainer for llwang@infor.org 2013-12-18 10:38:33 +00:00
cdcl Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
cdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
cdo Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
cgnslib Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
checkmol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
chemical-mime-data Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
chemtool Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
chemtool-devel science/chemtool-devel: Unbreak on FreeBSD 10+ 2013-12-25 22:08:13 +00:00
clhep Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
colt Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
crf++ Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
dcl Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
devisor Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
dlpoly-classic Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
dtiquery Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
ecs Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
elmer-eio Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
elmer-hutiter Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
elmer-matc science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
elmer-meshgen2d - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
elmergrid - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
elmerpost science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
epte Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
euler Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fastcap Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fasthenry Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
felt Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fisicalab Update core GNUstep libraries and fisicalab to latest versions 2014-01-12 22:54:58 +00:00
flounder Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
fvcom Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
fvcom-mpi Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fvm Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
g3data Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
gamess uncomment MANUAL_PACKAGE_BUILD. 2013-11-29 01:45:50 +00:00
gchemutils Add patch to unbreak with libc++ 10.0+. 2013-12-03 22:10:25 +00:00
gdis Explicitly link libraries on 10 unmaintained ports 2013-10-07 23:40:23 +00:00
getdp Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ghemical Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ghmm Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
gnudatalanguage Python cleanup: 2014-01-13 21:00:02 +00:00
gramps Python cleanup: 2014-01-13 21:00:02 +00:00
gromacs - USES=fortran. 2013-12-27 16:39:52 +00:00
gsmc - Enable staging 2013-12-30 22:50:38 +00:00
gtamsanalyzer Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
gwyddion - Update from 2.33 to 2.34 2014-01-03 00:08:56 +00:00
h5utils Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
harminv Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
hdf New LIB_DEPENDS syntax, USES=fortran, staging. 2013-12-27 16:55:28 +00:00
hdf-java - Convert to dos2unix.mk 2013-11-19 23:08:44 +00:00
hdf5 Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
hdf5-18 - Fix PKGNAME collision 2013-12-11 18:38:53 +00:00
hs-bio - Stagify lang/ghc and all the Haskell Cabal ports 2014-01-09 21:32:12 +00:00
InsightToolkit Now when it builds on 10.x, drop maintainership 2013-12-21 00:28:51 +00:00
isaac-cfd - USES=fortran gmake. 2013-12-27 20:26:21 +00:00
jmol - Update to version 13.2.3 [1] 2013-11-07 16:53:33 +00:00
jstrack - Convert to USES=tk 2014-01-14 10:30:24 +00:00
kalzium - Update from 1.1.0 to 1.1.1 2013-12-18 23:33:20 +00:00
kst2 Add patches to fix build on 10 and head 2013-12-09 15:08:42 +00:00
lamprop Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libctl Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
libghemical Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
libint Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libkml - Update LICENSE 2013-12-26 21:48:54 +00:00
liblinear Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
liboglappth Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libquantum Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libsvm Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libsvm-python Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
linsmith - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st]) 2013-10-22 14:01:38 +00:00
massxpert - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st]) 2013-10-22 14:01:38 +00:00
mbdyn Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mcstas Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
medit Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
meep Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mei - Upgrade to 1.0.4; 2013-11-26 21:30:22 +00:00
minc Part 2 at removing now useless FETCH_ARGS redifition 2014-01-03 01:12:59 +00:00
minc2 Mark as broken: does not build with newer hdf5 version: 2013-12-06 11:44:48 +00:00
mol2ps Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
mpb - New LIB_DEPENDS syntax. 2013-12-27 21:28:47 +00:00
mpqc Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mpqc-mpich Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
ncs science/ncs: fix 'python' usage to remove implicity dependency of lang/python 2013-12-17 21:55:48 +00:00
netcdf - Fix PKGNAME collision 2013-11-06 17:34:52 +00:00
netcdf-ftn - Remove LATEST_LINK 2013-12-10 19:18:39 +00:00
netcdf3-ftn - Fix PKGNAME collision 2013-11-06 17:35:50 +00:00
netcdf4 - Use CONFLICTS_INSTALL instead of CONFLICTS 2013-12-10 19:17:08 +00:00
nifticlib Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
openbabel Add upstream patch to fix the build with libc++. 2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-3DBuilder Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Bond-Find Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Canonicalize Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Elements Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-File-MDLMol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-Mopac Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-PDB Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SLN Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMARTS Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMILES Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-VRML Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-XYZ Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-FormulaPattern Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-InternalCoords Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Isotope Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-MacroMol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-MidasPattern Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Mok Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Mol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-Pattern Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Reaction Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Ring Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Geo-BUFR Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter-iArea - Support STAGEDIR 2013-09-30 20:59:03 +00:00
p5-Geo-ReadGRIB Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Geo-WebService-Elevation-USGS Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-PerlMol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Physics-Unit Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
paje Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
paraview Update freetype to 2.5.2. 2013-12-24 21:22:21 +00:00
peekabot Convert LIB_DEPENDS for ports depending on boost 2013-12-12 14:15:03 +00:00
pnetcdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
psi3 Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
psychopy Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-coards science/py-coards: Modernise and enable STAGE support 2014-01-26 00:52:15 +00:00
py-DendroPy Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
py-h5py science/py-h5py: update to 2.2.1 2013-12-13 19:59:42 +00:00
py-hcluster Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-mdp science/py-mdp: support staging 2013-12-29 11:39:54 +00:00
py-mlpy Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-netCDF4 science/py-netCDF4: support staging 2013-12-29 11:41:17 +00:00
py-obspy - Fix build with distribute -> setuptools change 2013-11-27 19:21:00 +00:00
py-paida Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
py-pupynere Python cleanup: 2014-01-13 21:00:02 +00:00
py-pyaixi Python cleanup: 2014-01-13 21:00:02 +00:00
py-pydap science/py-pydap: update to 3.1.1 2013-11-29 11:40:24 +00:00
py-pydicom Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
py-scikit-learn Use PYDISTUTILS_AUTOPLIST. 2013-11-05 12:37:28 +00:00
py-scimath - Update WWW: 2013-11-20 20:51:25 +00:00
py-scipy - Fix distinfo 2013-11-18 15:36:42 +00:00
py-ws2300 Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
pybrain Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pycdf Python cleanup: 2014-01-13 21:00:02 +00:00
pynn Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pyteomics Update to 2.2.1 2013-11-29 11:57:18 +00:00
pyteomics.biolccc Use PYDISTUTILS_AUTOPLIST 2014-01-23 08:42:15 +00:00
qcl - Update to version 0.6.3 2013-10-30 17:57:33 +00:00
qtresistors - Convert to USES=qmake (and other USES while I'm here) 2013-11-22 12:55:00 +00:00
R-cran-AMORE - Update to 0.2.14 2014-01-09 12:11:14 +00:00
R-cran-bayesm - Update to 2.2.5 2014-01-09 12:36:23 +00:00
R-cran-DCluster Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-e1071 - Update to 1.6-2 2014-01-12 12:19:47 +00:00
R-cran-eco Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-Epi Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-epicalc Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-snow Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
R-cran-som Convert Mk/bsd.cran.mk to the Uses framework. 2013-12-28 10:28:40 +00:00
ruby-dcl Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ruby-gphys Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ruby-netcdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
rubygem-ai4r - Add stage support 2013-10-30 02:56:33 +00:00
sigrok-cli The sigrok project aims at creating a portable, cross-platform, 2014-01-03 00:13:11 +00:00
silo - Update from 4.9 to 4.9.1 2013-12-18 23:27:40 +00:00
simlib - Update to 3.02 2013-09-21 11:02:36 +00:00
step Add my upstream commit that fixes the build with libc++. 2013-11-03 22:48:12 +00:00
svmlight Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
szip Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
udunits - Strip shared library 2013-10-10 14:32:08 +00:00
v_sim Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
veusz - Update to 1.19.1 2013-12-22 14:33:44 +00:00
vmd Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
voro++ Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
x11iraf Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
xfce4-equake-plugin - Update MASTER_SITES macro, xfce4-equake-plugin is now hosted on 2013-10-31 17:11:01 +00:00
xmakemol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
xmds Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
Makefile The sigrok project aims at creating a portable, cross-platform, 2014-01-03 00:13:11 +00:00