483203c167
- Remove gcc version restriction PR: ports/122435 Submitted by: Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
191 lines
6.5 KiB
Text
191 lines
6.5 KiB
Text
bin/t_coffee
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%%PORTDOCS%%%%DOCSDIR%%/README4T-COFFEE
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%%PORTDOCS%%%%DOCSDIR%%/aln_compare.doc.txt
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%%PORTDOCS%%%%DOCSDIR%%/seq_reformat.doc.txt
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%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.doc
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%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.htm
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%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.txt
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%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.doc
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%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.htm
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%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.txt
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%%EXAMPLESDIR%%/2seqs.fas
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%%EXAMPLESDIR%%/3d.aln
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%%EXAMPLESDIR%%/3d.dnd
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%%EXAMPLESDIR%%/3d.fasta
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%%EXAMPLESDIR%%/3d.html
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%%EXAMPLESDIR%%/3d_sample2.fasta
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%%EXAMPLESDIR%%/3d_sample3.fasta
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%%EXAMPLESDIR%%/3d_sample4.aln
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%%EXAMPLESDIR%%/b30.aln
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%%EXAMPLESDIR%%/block1.aln
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%%EXAMPLESDIR%%/block2.aln
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%%EXAMPLESDIR%%/cache
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%%EXAMPLESDIR%%/charge_relay_lib.tc_lib
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%%EXAMPLESDIR%%/clustalw_method.tc_method
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%%EXAMPLESDIR%%/combined_aln.aln
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%%EXAMPLESDIR%%/combined_aln.aln.aln
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%%EXAMPLESDIR%%/combined_aln.aln.html
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%%EXAMPLESDIR%%/command_line.txt
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%%EXAMPLESDIR%%/error_report.T-COFFEE
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%%EXAMPLESDIR%%/g0.aln
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%%EXAMPLESDIR%%/x
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%%EXAMPLESDIR%%/g10.aln
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%%EXAMPLESDIR%%/g15.aln
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%%EXAMPLESDIR%%/g5.aln
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%%EXAMPLESDIR%%/kinases.aln
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%%EXAMPLESDIR%%/marna.tc_lib
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%%EXAMPLESDIR%%/new_profile1_pdb1.aln
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%%EXAMPLESDIR%%/new_profile1_pdb1.html
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%%EXAMPLESDIR%%/newprf.aln
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%%EXAMPLESDIR%%/newprf.html
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%%EXAMPLESDIR%%/p120.aln
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%%EXAMPLESDIR%%/p250
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%%EXAMPLESDIR%%/p350.aln
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%%EXAMPLESDIR%%/prf1.aln
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%%EXAMPLESDIR%%/prf1.dnd
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%%EXAMPLESDIR%%/prf1.fasta
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%%EXAMPLESDIR%%/prf2.aln
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%%EXAMPLESDIR%%/prf2.dnd
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%%EXAMPLESDIR%%/prf2.fasta
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%%EXAMPLESDIR%%/prf3.aln
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%%EXAMPLESDIR%%/prf3.fasta
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%%EXAMPLESDIR%%/profile1_pdb1.aln
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%%EXAMPLESDIR%%/profile1_pdb1.fasta
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%%EXAMPLESDIR%%/profile1_pdb1.html
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%%EXAMPLESDIR%%/seq.fas
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%%EXAMPLESDIR%%/profile1_pdb1_1.aln
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%%EXAMPLESDIR%%/profile1_pdb1_1.html
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%%EXAMPLESDIR%%/profile2_pdb2.aln
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%%EXAMPLESDIR%%/profile2_pdb2.dnd
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%%EXAMPLESDIR%%/profile2_pdb2.fasta
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%%EXAMPLESDIR%%/profile2_pdb2.html
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%%EXAMPLESDIR%%/sample_aln1.aln
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%%EXAMPLESDIR%%/sample_aln1.dnd
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%%EXAMPLESDIR%%/sample_aln1.fasta
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%%EXAMPLESDIR%%/sample_aln1.tc_lib
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%%EXAMPLESDIR%%/sample_aln1_1.aln
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%%EXAMPLESDIR%%/sample_aln1_2.aln
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%%EXAMPLESDIR%%/sample_aln2.aln
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%%EXAMPLESDIR%%/sample_aln2.fasta
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%%EXAMPLESDIR%%/sample_aln2.msf
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%%EXAMPLESDIR%%/sample_aln3.aln
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%%EXAMPLESDIR%%/sample_aln4.aln
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%%EXAMPLESDIR%%/sample_aln5.aln
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%%EXAMPLESDIR%%/sample_aln6.aln
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%%EXAMPLESDIR%%/sample_aln6.cache
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%%EXAMPLESDIR%%/sample_aln6.html
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%%EXAMPLESDIR%%/sample_aln7.aln
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%%EXAMPLESDIR%%/sample_aln7.cache_aln
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%%EXAMPLESDIR%%/sample_dnaseq1.fasta
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%%EXAMPLESDIR%%/sample_lib1.mocca_lib
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%%EXAMPLESDIR%%/sample_lib1.tc_lib
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%%EXAMPLESDIR%%/sample_lib2.tc_lib
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%%EXAMPLESDIR%%/sample_lib3.tc_lib
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%%EXAMPLESDIR%%/sample_lib4.tc_lib02
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%%EXAMPLESDIR%%/sample_lib5.tc_lib
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%%EXAMPLESDIR%%/sample_list1.lib_list
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%%EXAMPLESDIR%%/sample_param_file.param
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%%EXAMPLESDIR%%/sample_profile1.aln
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%%EXAMPLESDIR%%/sample_profile2.aln
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%%EXAMPLESDIR%%/sample_rnaseq1.fasta
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%%EXAMPLESDIR%%/sample_seq1.aln
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%%EXAMPLESDIR%%/sv.aln
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%%EXAMPLESDIR%%/sample_seq1.fasta
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%%EXAMPLESDIR%%/sample_seq2.fasta
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%%EXAMPLESDIR%%/sample_seq3.fasta
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%%EXAMPLESDIR%%/sample_seq4.fasta
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%%EXAMPLESDIR%%/sample_seq5.fasta
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%%EXAMPLESDIR%%/sample_seq6.fasta
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%%EXAMPLESDIR%%/sample_seq7.fasta
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%%EXAMPLESDIR%%/sample_seq8.seq
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%%EXAMPLESDIR%%/sample_tree.dnd
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%%EXAMPLESDIR%%/sample_tree2.dnd
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%%EXAMPLESDIR%%/sample_tree3.dnd
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%%EXAMPLESDIR%%/sproteases.small
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%%EXAMPLESDIR%%/sproteases.small.blosum62mt.sim_file
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%%EXAMPLESDIR%%/sproteases1_small.aln
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%%EXAMPLESDIR%%/sproteases1_small.dnd
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%%EXAMPLESDIR%%/sproteases1_small.fasta
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%%EXAMPLESDIR%%/sproteases2_small.aln
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%%EXAMPLESDIR%%/sproteases2_small.dnd
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%%EXAMPLESDIR%%/sproteases2_small.fasta
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%%EXAMPLESDIR%%/sproteases_chain.fasta
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%%EXAMPLESDIR%%/sproteases_large.aln
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%%EXAMPLESDIR%%/sproteases_large.code_name
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%%EXAMPLESDIR%%/sproteases_large.coded.fasta
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%%EXAMPLESDIR%%/sproteases_large.dnd
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%%EXAMPLESDIR%%/sproteases_large.fasta
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%%EXAMPLESDIR%%/sproteases_large.fasta.blosum62mt.sim2_file
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%%EXAMPLESDIR%%/sproteases_large.fasta.blosum62mt.sim_file
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%%EXAMPLESDIR%%/sproteases_large.fasta~
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%%EXAMPLESDIR%%/sproteases_large.html
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%%EXAMPLESDIR%%/sproteases_large.muscle
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%%EXAMPLESDIR%%/sproteases_large_muscle_trim.aln
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%%EXAMPLESDIR%%/sproteases_oneseq.fasta
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%%EXAMPLESDIR%%/sproteases_pair.fasta
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%%EXAMPLESDIR%%/sproteases_small.aln
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%%EXAMPLESDIR%%/sproteases_small.b62_aln
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%%EXAMPLESDIR%%/sproteases_small.cw_aln
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%%EXAMPLESDIR%%/sproteases_small.dnd
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%%EXAMPLESDIR%%/sproteases_small.expresso
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%%EXAMPLESDIR%%/sproteases_small.fasta
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%%EXAMPLESDIR%%/sproteases_small.g0.aln
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%%EXAMPLESDIR%%/sproteases_small.g0.cw_aln
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%%EXAMPLESDIR%%/sproteases_small.g10.cw_aln
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%%EXAMPLESDIR%%/sproteases_small.g10.html
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%%EXAMPLESDIR%%/sproteases_small.g10.score_ascii
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%%EXAMPLESDIR%%/sproteases_small.g15.cw_aln
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%%EXAMPLESDIR%%/sproteases_small.ph
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%%EXAMPLESDIR%%/sproteases_small.g15.html
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%%EXAMPLESDIR%%/sproteases_small.html
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%%EXAMPLESDIR%%/sproteases_small.mafft
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%%EXAMPLESDIR%%/sproteases_small.mcoffee
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%%EXAMPLESDIR%%/sproteases_small.muscle
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%%EXAMPLESDIR%%/sproteases_small.probcons
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%%EXAMPLESDIR%%/sproteases_small.score_ascii
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%%EXAMPLESDIR%%/sproteases_small.score_html
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%%EXAMPLESDIR%%/sproteases_small.tc_aln
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%%EXAMPLESDIR%%/sproteases_small.tc_aln.aln
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%%EXAMPLESDIR%%/sproteases_small.tc_aln.html
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%%EXAMPLESDIR%%/sproteases_small.template_file
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%%EXAMPLESDIR%%/sproteases_small_dna.fasta
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%%EXAMPLESDIR%%/struc1.pdb
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%%EXAMPLESDIR%%/struc2.pdb
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%%EXAMPLESDIR%%/struc3.pdb
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%%EXAMPLESDIR%%/struc4.pdb
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%%EXAMPLESDIR%%/struc5.pdb
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%%EXAMPLESDIR%%/struc6.pdb
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%%EXAMPLESDIR%%/struc7.pdb
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%%EXAMPLESDIR%%/struc8.pdb
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%%EXAMPLESDIR%%/sv.dnd
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%%EXAMPLESDIR%%/sv.fasta
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%%EXAMPLESDIR%%/sv.html
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%%EXAMPLESDIR%%/sv.maln
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%%EXAMPLESDIR%%/t_coffee.log
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%%EXAMPLESDIR%%/template_file.template
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%%EXAMPLESDIR%%/template_file6.template
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%%EXAMPLESDIR%%/template_file7.template
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%%EXAMPLESDIR%%/test.lib
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%%EXAMPLESDIR%%/test.tc_lib
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%%EXAMPLESDIR%%/test_lib.tc_lib
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%%EXAMPLESDIR%%/three_pdb.aln
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%%EXAMPLESDIR%%/three_pdb.dnd
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%%EXAMPLESDIR%%/three_pdb.fasta
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%%EXAMPLESDIR%%/three_pdb_two_seq.aln
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%%EXAMPLESDIR%%/three_pdb_two_seq.dnd
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%%EXAMPLESDIR%%/three_pdb_two_seq.fasta
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%%EXAMPLESDIR%%/three_pdb_two_seq.fasta~
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%%EXAMPLESDIR%%/tlara_libraries.tar
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%%EXAMPLESDIR%%/tlara_tRNA_aln10.output
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%%EXAMPLESDIR%%/tlara_tRNA_aln50.output
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%%EXAMPLESDIR%%/tlara_tRNA_aln51.output
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%%EXAMPLESDIR%%/tmp_file_for_extract_from_pdb169168.1
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%%EXAMPLESDIR%%/tmp_file_for_extract_from_pdb89508.1
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%%EXAMPLESDIR%%/two_profiles.template_file
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%%DATADIR%%/license.txt
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%%DATADIR%%/html/t_coffee.html
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%%DATADIR%%/html/t_coffee4html.cgi
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%%PORTDOCS%%@dirrmtry %%DOCSDIR%%
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@dirrmtry %%EXAMPLESDIR%%
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@dirrm %%DATADIR%%/html
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@dirrmtry %%DATADIR%%
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