Pawel Pekala 987bb3de6b Update to version 2.12.4 ... PR: ports/172218 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes		2012-10-30 17:53:39 +00:00
..
adun	- reset MAINTAINER	2012-06-26 05:44:19 +00:00
ariadne	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
artemis	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
avida	Update to version 2.12.4	2012-10-30 17:53:39 +00:00
babel	Fix build with clang	2012-08-24 10:18:51 +00:00
belvu	Deprecate a bunch of ports that are either abandonware and/or for which no more	2012-10-26 14:57:50 +00:00
biococoa	- cleanup comments	2012-10-13 13:39:56 +00:00
biojava	Fix typos in COMMENT	2012-07-29 11:17:02 +00:00
blast	- Take maintainership	2012-10-01 14:55:55 +00:00
blat	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
boinc-simap	- Adjust BOINC_* variables to be consistent with new system in boinc-client	2012-05-16 13:46:30 +00:00
chemeq	Remove WWW entries from unmaintained ports that return 404 or where the domain	2011-08-02 20:58:23 +00:00
clustalw	Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since	2011-08-11 19:20:17 +00:00
consed
crux	Does not build on powerpc-9: error in pthreads.	2011-11-10 14:30:51 +00:00
dotter	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
embassy	- Take maintainership	2012-10-01 14:55:55 +00:00
emboss	- Take maintainership	2012-10-01 14:55:55 +00:00
fasta
fasta3	- Take maintainership	2012-10-01 14:55:55 +00:00
fastdnaml	- Fix MASTER_SITES and WWW: line	2011-08-26 00:24:48 +00:00
finchtv	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
fluctuate
garlic	Fix typos in COMMENT	2012-07-25 06:32:06 +00:00
genpak	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
gff2ps	- Update MASTER_SITES and WWW: line	2012-02-19 23:24:52 +00:00
gmap
gperiodic	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
grappa	Update to GNU make 3.82 after numerous -exp runs.	2011-04-11 19:54:35 +00:00
hmmer	- Take maintainership	2012-10-01 14:55:55 +00:00
iolib	- Remove WITH_FBSD10_FIX, is no longer needed	2011-11-09 15:26:04 +00:00
jalview	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
lagan	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
lamarc	- Update to version 2.1.8	2012-06-17 20:22:32 +00:00
libgenome
libsbml
linux-foldingathome
mafft	Mark as broken on sparc64: depends on thread-local storage, which is not	2012-09-08 08:30:39 +00:00
mapm3
migrate
molden	Mea culpa, s/Whom/Created by/	2012-09-23 15:40:58 +00:00
mopac	- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)	2011-09-23 22:26:39 +00:00
mrbayes
mummer	- Update to 3.23	2012-01-17 00:51:39 +00:00
muscle	Fix typos in COMMENT	2012-07-24 07:19:21 +00:00
ncbi-toolkit	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
njplot	s/X11BASE/LOCALBASE/, or equivalent.	2012-06-24 21:53:38 +00:00
ortep3
p5-AcePerl	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene	- remove maintainer tags from pkg-descr	2011-10-22 23:50:23 +00:00
p5-Bio-Das	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-Das-Lite	- Fix missing DEPENDS to silence build warnings	2011-09-24 20:45:23 +00:00
p5-Bio-GFF3	- Update to 1.4	2012-10-30 01:59:37 +00:00
p5-Bio-Glite	- Reset maintainer to perl@	2012-10-30 02:03:29 +00:00
p5-Bio-Graphics	- Update to 2.29	2012-06-18 09:30:35 +00:00
p5-Bio-MAGETAB	- Update to 1.26	2012-10-25 00:18:32 +00:00
p5-Bio-NEXUS	- Update to 0.78	2012-02-11 02:04:41 +00:00
p5-Bio-Phylo	- Update to 0.50	2012-06-12 18:55:28 +00:00
p5-Bio-SCF	At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450	2012-01-21 17:40:15 +00:00
p5-bioperl	- Take maintainership	2012-10-01 14:55:55 +00:00
p5-bioperl-run	- Remove SITE_PERL from *_DEPENDS	2012-06-30 14:53:22 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml
platon	The vast majority of pkg-descr files had the following format when they	2011-10-24 09:11:38 +00:00
plink	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
plinkseq	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
povchem	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
primer3	- Take maintainership	2012-10-01 14:55:55 +00:00
protomol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
psi88
py-biopython	- update to 1.60	2012-09-25 08:06:42 +00:00
pycogent	- Update to 1.5.3	2012-10-08 03:17:02 +00:00
pyfasta	- Update to 0.4.5	2012-02-23 13:43:25 +00:00
pymol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
python-nexus	- Update to 0.87	2011-12-23 08:05:00 +00:00
rasmol
recombine
ruby-bio
seaview	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
seqan	Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.	2012-07-21 22:20:32 +00:00
seqio
sim4
ssaha	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
t_coffee	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tinker	- ${FFLAGS} might contain commas	2011-10-10 20:17:22 +00:00
treepuzzle
treeviewx	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tRNAscan-SE
velvet	Update to 1.1.04	2011-06-09 16:33:21 +00:00
wise
xdrawchem	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
xmolwt	The vast majority of pkg-descr files had the following format when they	2011-10-24 09:11:38 +00:00
Makefile	2012-10-20 chinese/wangttf: No more public distfiles	2012-10-25 23:05:56 +00:00