28 lines
704 B
Makefile
28 lines
704 B
Makefile
PORTNAME= rna-seq
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DISTVERSION= 0.1.4
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CATEGORIES= biology python
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MASTER_SITES= # empty
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Metaport for RNA-Seq analysis
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WWW= https://github.com/auerlab/
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LICENSE= BSD2CLAUSE
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RUN_DEPENDS= sra-tools>0:biology/sra-tools \
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fastq-trim>0:biology/fastq-trim \
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fastqc>0:biology/fastqc \
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${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR} \
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biolibc-tools>0:biology/biolibc-tools \
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gffread>0:biology/gffread \
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kallisto>0:biology/kallisto \
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hisat2>0:biology/hisat2 \
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rna-STAR>0:biology/star \
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samtools>0:biology/samtools \
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fasda>0:biology/fasda \
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webbrowser>0:www/webbrowser \
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curl>0:ftp/curl
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USES= metaport python
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.include <bsd.port.mk>
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