71ac81015e
* Remove openmp support. We don't seem to need it. * Adjust patch * Add -fcommon to make it build in 13 and 14-current * Add patch to include -DPIC -fPIC in i386. Otherwise we get: ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.13 in readonly segment
56 lines
3.9 KiB
Text
56 lines
3.9 KiB
Text
--- Makefile.INCLUDE.orig 2021-09-01 13:56:01 UTC
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+++ Makefile.INCLUDE
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@@ -99,7 +99,7 @@ MISC = AFNI_atlas_spaces.niml AFNI.Xdefaults AFNI.a
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## AFNI package, but included because they are useful. Some of
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## them are Open Source programs, not from the AFNI group at all.
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-EXTRAS = cjpeg djpeg whirlgif myget rmz aiv mycat quotize $(EXPROGS)
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+EXTRAS = whirlgif myget Xphace rmz aiv mycat quotize $(EXPROGS)
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# mpegtoppm in above list
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@@ -112,7 +112,7 @@ EXTRAS = cjpeg djpeg whirlgif myget rmz aiv mycat qu
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PROGS_1 = afni to3d from3d 3dclust nsize 3dinfo 3dmerge count \
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sfim tfim imrotate imreg imstat 3dnvals \
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fim2 imand immask imdump imaver 3dhistog 3daxialize \
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- cdf 2swap 4swap 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta \
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+ 2swap 4swap 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta \
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waver 3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket \
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3dNLfim 3dTSgen plugout_tt plugout_ijk \
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3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna \
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@@ -125,7 +125,7 @@ PROGS_2 = 3dTshift 3dDetrend 1dfft 1dcat 3drename 1dn
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3dfim+ imcutup imcat 3dWinsor 3dZeropad 3dTagalign \
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3dMean 3dAttribute cat_matvec 3dOverlap 3dClipLevel 3dZregrid \
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3dEntropy 3ddelay 3dRowFillin 1dgrayplot 3dToutcount 1dsum \
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- 3dExtrema qhull strblast 3dConvolve 3dZcutup 3dZcat 3dTqual \
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+ 3dExtrema strblast 3dConvolve 3dZcutup 3dZcat 3dTqual \
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3dGetrow 3dTcorrelate 3dcopy Vecwarp 3dCM fdrval \
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3dAFNItoANALYZE 3dAFNItoNIFTI \
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3dAutoTcorrelate 3dFDR rtfeedme 3dAutomask 3dBrickStat \
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@@ -148,7 +148,7 @@ PROGS_3 = 3dAnhist 3dAFNIto3D 3dWarp nicat
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PROGS_4 = 3dBlurInMask 3dRank 3dFFT 1dgenARMA11 3dPeriodogram 1dAstrip \
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3dLocalPV 3dBandpass 3dSetupGroupInCorr 3dGroupInCorr 3dTcorr1D \
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3dClustSim 3dRetinoPhase 3dMaskToASCII 3dttest++ 3dDTtoDWI \
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- niccc rbox qdelaunay 3dkmeans 3dXYZcat 3dPolyfit 3dNwarpApply \
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+ niccc 3dkmeans 3dXYZcat 3dPolyfit 3dNwarpApply \
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1dCorrelate 3dNwarpCalc dicom_hinfo apsearch 1dBport \
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3dNormalityTest 3dmask_tool FIRdesign help_format 2perm \
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3dClustCount column_cat 3dUnifize 3dNwarpCat 3dQwarp 3dLocalHistog \
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@@ -175,7 +175,7 @@ PROGRAMS = $(PROGS_1) $(PROGS_2) $(PROGS_3) $(PROGS_4)
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PROGRAMS_NOPLUG = \
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afni to3d from3d 3dclust nsize 3dinfo 3dmerge sfim tfim imrotate \
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imreg imstat count fim2 imand immask imdump imaver 3dhistog imupsam \
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- cdf 2swap 4swap 3dANOVA 3dANOVA2 3dANOVA3 3drefit waver 3dnewid \
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+ 2swap 4swap 3dANOVA 3dANOVA2 3dANOVA3 3drefit waver 3dnewid \
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3dcalc ccalc imcalc 2dImReg 3dmaskave adwarp fdrval 3dMannWhitney \
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3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna imstack byteorder \
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3dDeconvolve 3dTcat 3drotate 3dvolreg 1dplot 24swap 3dTsmooth RSFgen \
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@@ -213,7 +213,7 @@ PROGRAMS_NOPLUG =
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PROGRAMS_EXE = \
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afni.exe to3d from3d 3dclust nsize 3dinfo 3dmerge sfim tfim imrotate \
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imreg imstat 3dnvals count fim2 imand immask imdump imaver 3dhistog \
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- 3dGetrow cdf 2swap 4swap 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta waver \
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+ 3dGetrow 2swap 4swap 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta waver \
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3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket 3dAFNItoNIML \
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plugout_tt plugout_ijk 3dMannWhitney 3dWilcoxon 3dKruskalWallis \
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3dFriedman 3dRegAna 2dImReg 3dmaskave byteorder imstack 3dDeconvolve \
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