488fd1255a
errors with libc++ 3.8.0: In file included from src/QScoreAdapter.cpp:1: In file included from src/QScoreAdapter.h:4: In file included from ../../include/U2Core/MAlignment.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/MAlignment.h:25: In file included from ../../include/U2Core/../../corelibs/U2Core/src/datatype/MAlignmentInfo.h:25: In file included from /usr/local/include/qt5/QtCore/QString:1: In file included from /usr/local/include/qt5/QtCore/qstring.h:41: In file included from /usr/local/include/qt5/QtCore/qchar.h:37: In file included from /usr/local/include/qt5/QtCore/qglobal.h:39: /usr/include/c++/v1/cstddef:43:15: fatal error: 'stddef.h' file not found #include_next <stddef.h> ^ This is because the port tries to add /usr/include as a system include directory, using -isystem, and this screws up the order of include directories. Fix it by patching up a number of .pri files to avoid using the -isystem flag. Approved by: h2+fbsdports@fsfe.org (maintainer) PR: 209366 MFH: 2016Q2 |
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patch-src_corelibs_U2Private_U2Private.pro | ||
patch-src_libs__3rdparty_samtools_samtools.pri | ||
patch-src_plugins__3rdparty_umuscle_src_MuscleWorkPool.cpp | ||
patch-src_plugins__3rdparty_variants_variants.pri | ||
patch-src_plugins__checker_src_Main.cpp | ||
patch-src_ugene__globals.pri | ||
patch-src_ugenecl_src_Main.cpp | ||
patch-src_ugeneui_src_Main.cpp | ||
patch-ugene.pro |