..
adun
- reset MAINTAINER
2012-06-26 05:44:19 +00:00
ariadne
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 14:10:02 +00:00
artemis
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 11:25:27 +00:00
avida
- Fix build with clang
2013-06-04 08:26:03 +00:00
babel
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:01:47 +00:00
biococoa
- cleanup comments
2012-10-13 13:39:56 +00:00
biojava
Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP
2012-12-11 07:26:38 +00:00
blast
- Take maintainership
2012-10-01 14:55:55 +00:00
blat
. remove pkg-plist (along with the previous commit).
2013-06-19 18:44:32 +00:00
boinc-simap
Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk
2013-04-29 12:20:35 +00:00
chemeq
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 20:01:30 +00:00
clustalw
consed
crux
- adoption of optionsNG
2013-03-18 06:48:55 +00:00
dotter
- Mark broken checksum mismatch
2013-03-25 01:41:31 +00:00
embassy
- Convert USE_ICONV=yes to USES=iconv
2013-04-27 08:50:46 +00:00
emboss
- Take maintainership
2012-10-01 14:55:55 +00:00
fasta
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 18:51:16 +00:00
fasta3
- Take maintainership
2012-10-01 14:55:55 +00:00
fastdnaml
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 13:35:55 +00:00
finchtv
- Reassign to the heap at maintainer's request
2012-10-01 14:45:16 +00:00
fluctuate
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 12:43:28 +00:00
garlic
Fix typos in COMMENT
2012-07-25 06:32:06 +00:00
genpak
- update png to 1.5.10
2012-06-01 05:26:28 +00:00
gff2ps
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 18:56:37 +00:00
gmap
gperiodic
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:05:47 +00:00
grappa
hmmer
- Take maintainership
2012-10-01 14:55:55 +00:00
iolib
- Update to 1.13.0
2013-04-30 15:41:49 +00:00
jalview
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 11:25:27 +00:00
lagan
- Update to version 2.0
2012-11-15 07:04:29 +00:00
lamarc
. trim Makefile headers;
2013-06-19 15:39:18 +00:00
libgenome
. add license (GPLv2);
2013-06-19 18:53:54 +00:00
libsbml
- adoption of optionsNG
2013-03-18 06:50:12 +00:00
linux-foldingathome
mafft
Mark as broken on sparc64: depends on thread-local storage, which is not
2012-09-08 08:30:39 +00:00
mapm3
migrate
- Update to 3.5.1
2013-05-26 07:49:47 +00:00
molden
- Update to 5.0.6
2013-04-26 06:57:37 +00:00
mopac
. NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;
2013-06-19 18:38:46 +00:00
mrbayes
mummer
- Update to 3.23
2012-01-17 00:51:39 +00:00
muscle
Fix typos in COMMENT
2012-07-24 07:19:21 +00:00
ncbi-toolkit
- Update to 2012.06.20
2013-03-14 05:27:58 +00:00
njplot
s/X11BASE/LOCALBASE/, or equivalent.
2012-06-24 21:53:38 +00:00
ortep3
. introdice optionsNG to the port;
2013-06-19 20:06:59 +00:00
p5-AcePerl
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-Das
Cleanup supporting perl version 5.8 and 5.10,
2012-12-17 15:39:36 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3
- Update to 1.5
2012-12-16 04:22:15 +00:00
p5-Bio-Glite
For perl@ owned ports:
2013-03-29 00:44:53 +00:00
p5-Bio-Graphics
Add missing item to pkg-plist reported by QAT but not reported by poudriere.
2013-03-03 15:22:43 +00:00
p5-Bio-MAGETAB
For perl@ owned ports:
2013-03-29 00:44:53 +00:00
p5-Bio-NEXUS
For perl@ owned ports:
2013-03-29 00:44:53 +00:00
p5-Bio-Phylo
- Update to 0.52 [1]
2013-02-16 14:58:51 +00:00
p5-Bio-SCF
- Trim Makefile headers
2013-06-01 14:22:35 +00:00
p5-bioperl
- Avoid of using SITE_PERL
2013-06-07 06:51:42 +00:00
p5-bioperl-run
- Remove SITE_PERL from *_DEPENDS
2012-06-30 14:53:22 +00:00
paml
- Trim Makefile headers
2013-06-01 14:22:35 +00:00
phd2fasta
Remove unneeded escaping
2013-04-26 16:23:13 +00:00
phrap
phred
phylip
Fix some screw ups introduced in r319847.
2013-06-24 18:09:52 +00:00
phyml
- Update to 20121109.
2013-02-04 10:07:30 +00:00
platon
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
plink
Add new ports biology/plink [1] and biology/plinkseq [2]:
2012-09-27 09:59:25 +00:00
plinkseq
Fix build with protobuf-2.5.0
2013-03-21 14:09:22 +00:00
povchem
- remove empty files
2013-02-15 08:57:19 +00:00
primer3
- Take maintainership
2012-10-01 14:55:55 +00:00
protomol
- adoption of optionsNG
2013-03-18 06:54:39 +00:00
psi88
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:54:13 +00:00
py-biopython
- update to 1.60
2012-09-25 08:06:42 +00:00
pycogent
- Update to 1.5.3
2012-10-08 03:17:02 +00:00
pyfasta
- Trim Makefile headers
2013-06-01 14:22:35 +00:00
pymol
Switch from libglut to freeglut and retire libglut. Libglut hasn't been
2012-08-04 22:52:02 +00:00
python-nexus
- Update to 0.87
2011-12-23 08:05:00 +00:00
rasmol
recombine
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:15:14 +00:00
ruby-bio
- adoption of optionsNG
2013-03-18 06:55:42 +00:00
seaview
- Update to 4.4.1
2013-03-26 01:08:40 +00:00
seqan
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
seqio
Remove stale (since r321246) pkg-plist file.
2013-06-19 21:04:36 +00:00
sim4
. add license (GPLv2);
2013-06-19 16:36:53 +00:00
ssaha
- Reassign to the heap at maintainer's request
2012-10-01 14:45:16 +00:00
t_coffee
- Update to 9.03.
2013-01-14 08:04:38 +00:00
tinker
- Update to 6.2.05
2013-05-29 05:25:49 +00:00
treepuzzle
treeviewx
- Reassign to the heap at maintainer's request
2012-10-01 14:45:16 +00:00
tRNAscan-SE
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-19 19:20:25 +00:00
ugene
Unbreak on 7.X and i386 systems.
2013-02-25 13:00:15 +00:00
velvet
wise
Fix build by adding an explicit dep on pkgconf
2013-05-03 20:48:34 +00:00
xdrawchem
- Strip header at request of original creator
2013-01-27 05:55:20 +00:00
xmolwt
Use optionsNG for DOCS.
2013-06-19 19:07:35 +00:00
Makefile
Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.
2013-02-23 04:50:48 +00:00
9db47c1f7c