| .. |
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abyss
|
cleanup: drop support for EOL FreeBSD 11.X
|
2021-09-30 23:23:30 +02:00 |
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ad2vcf
|
biology/ad2vcf: Update to 0.1.3.31
|
2021-08-27 20:28:10 -05:00 |
|
artemis
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
avida
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
babel
|
*/*: Remove redundant '-*' from CONFLICTS definitions
|
2021-11-25 22:40:11 +01:00 |
|
bamtools
|
devel/jsoncpp: Update to 1.9.4 -> 1.9.5
|
2021-11-05 12:09:19 -07:00 |
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bamutil
|
biology/bamutil: Update to 1.0.15
|
2021-10-20 14:43:38 -05:00 |
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bbmap
|
biology/bbmap: Update to 38.92
|
2021-08-22 08:59:58 -05:00 |
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bcftools
|
biology/bcftools: Update to 1.13
|
2021-07-12 08:30:10 -05:00 |
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bedtools
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bfc
|
biology/bfc: Correct sequencing errors from Illumina sequencing data
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2021-08-23 12:28:41 -05:00 |
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bioawk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biococoa
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biolibc
|
biology/biolibc: Update to 0.2.0.11
|
2021-09-17 11:33:57 -05:00 |
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biolibc-tools
|
biology/biolibc-tools: High-performance tools based on biolibc
|
2021-08-30 08:09:23 -05:00 |
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bioparser
|
biology/bioparser: Update 3.0.12-2 -> 3.0.15
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2021-09-21 09:41:49 -07:00 |
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biosig
|
biology/biosig: Add DISTNAME instead of DISTVERSIONSUFFIX
|
2021-08-16 19:57:30 -07:00 |
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biosoup
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biostar-tools
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biology/biostar-tools: Allow package build on non-amd64 systems
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2021-12-01 09:49:28 -06:00 |
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bolt-lmm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie2
|
biology/bowtie2: Update to 2.4.4
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2021-05-24 11:35:43 -05:00 |
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bwa
|
biology/bwa: don't use GCC on powerpc64le
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2021-12-01 17:34:18 +00:00 |
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canu
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cd-hit
|
biology/cd-hit: fix build on armv7
|
2021-11-21 13:26:44 +00:00 |
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cdbfasta
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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checkm
|
math/py-matplotlib: chase minimum Python version in dependent ports
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2021-05-10 22:13:20 +02:00 |
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clustal-omega
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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clustalw
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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cufflinks
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cytoscape
|
biology/cytoscape: mark unconditionally BROKEN
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2021-05-12 14:55:52 +03:00 |
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ddocent
|
cleanup: drop support for EOL FreeBSD 11.X
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2021-09-30 23:23:30 +02:00 |
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diamond
|
biology/diamond: Update to 2.0.13
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2021-11-11 13:17:24 -04:00 |
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dsr-pdb
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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edlib
|
biology/edlib: Update 1.2.6.20201202 -> 1.2.7
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2021-08-21 10:12:15 -07:00 |
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emboss
|
*/*: Remove redundant '-[0-9]*' from CONFLICTS
|
2021-10-29 11:50:18 +02:00 |
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erminej
|
biology/erminej: Analyses of gene sets, e.g. gene expression profiling
|
2021-07-09 07:26:58 -05:00 |
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exonerate
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fasta
|
Deorbit RESTRICTED && NO_CDROM, part two.
|
2021-05-06 13:47:48 +02:00 |
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fasta3
|
Deorbit RESTRICTED && NO_CDROM, part one.
|
2021-05-06 13:47:41 +02:00 |
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fastahack
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastdnaml
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
|
fastool
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastp
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biology/fastp: Update to 0.23.1
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2021-10-20 11:37:39 -05:00 |
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fastqc
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fasttree
|
biology/fasttree: fix build on armv7
|
2021-06-15 08:41:19 +00:00 |
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fastx-toolkit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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figtree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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flash
|
biology/flash: Fast Length Adjustment of SHort reads
|
2021-08-23 12:26:47 -05:00 |
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fluctuate
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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freebayes
|
biology/freebayes: builds fine on armv7
|
2021-11-05 01:14:22 +00:00 |
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garlic
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
gatk
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gcta
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gemma
|
math/gsl: update to 2.7
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2021-06-16 21:31:27 +02:00 |
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generand
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gff2ps
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gffread
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biology/gffread: GFF/GTF format conversions, filtering, FASTA extraction, etc
|
2021-11-10 14:49:10 -06:00 |
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gmap
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Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
|
2021-10-25 12:58:29 +00:00 |
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gperiodic
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
graphlan
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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groopm
|
math/py-matplotlib: chase minimum Python version in dependent ports
|
2021-05-10 22:13:20 +02:00 |
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haplohseq
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hhsuite
|
biology/hhsuite: fix packaging on powerpc
|
2021-11-16 12:03:42 +00:00 |
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hisat2
|
biology/hisat2: Add support for powerpc64* and aarch64
|
2021-11-28 16:52:09 -06:00 |
|
hmmer
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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htslib
|
biology/htslib: Add CPE information
|
2021-09-10 21:18:20 +00:00 |
|
hyphy
|
biology/hyphy: Update to 2.5.33
|
2021-11-17 07:51:41 -04:00 |
|
igv
|
cleanup: drop support for EOL FreeBSD 11.X
|
2021-09-30 23:23:30 +02:00 |
|
infernal
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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iolib
|
biology/iolib: Drop maintainership
|
2021-05-19 20:56:24 +01:00 |
|
iqtree
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
|
jalview
|
cleanup: drop support for EOL FreeBSD 11.X
|
2021-09-30 23:23:30 +02:00 |
|
jellyfish
|
*: Clean up some things
|
2021-10-12 17:01:38 +02:00 |
|
kallisto
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
lamarc
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
libbigwig
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
libgtextutils
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
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libneurosim
|
biology/libneurosim: New port: Common interfaces for neuronal simulators
|
2021-10-08 10:20:27 -07:00 |
|
libnuml
|
biology/libnuml: New port: C++ library for Numerical Markup Language
|
2021-09-18 23:47:02 -07:00 |
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libsbml
|
biology/libsbml: Fix build with Python 3.10
|
2021-11-02 05:28:40 +08:00 |
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libsedml
|
biology/libsedml: New port: C++ SED-ML library
|
2021-09-19 11:15:35 -07:00 |
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linux-foldingathome
|
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
|
2021-10-25 12:58:29 +00:00 |
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mafft
|
biology/mafft: Update to 7.267
|
2021-10-22 13:11:23 +08:00 |
|
mapm3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
migrate
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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minimap2
|
biology/minimap2: Update to 2.23
|
2021-11-30 10:29:13 -06:00 |
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mmseqs2
|
biology/mmseqs2: disable on 32-bits
|
2021-09-12 21:05:53 +00:00 |
|
molden
|
graphics/mesa-libs: Bump reverse deps for libglvnd
|
2021-06-22 11:53:08 -07:00 |
|
mopac
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
mothur
|
biology/mothur: Update 1.46.0 -> 1.46.1
|
2021-09-02 02:29:56 -07:00 |
|
mrbayes
|
*: Remove unnecessary 'port' argument from USES=readline
|
2021-05-15 09:14:04 +02:00 |
|
mummer
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
muscle
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ncbi-blast+
|
devel/grpc: Update to 1.41.0
|
2021-10-25 23:57:13 +08:00 |
|
ncbi-cxx-toolkit
|
biology/ncbi-cxx-toolkit: Update 25.0.0 -> 25.2.0
|
2021-10-01 00:14:37 -07:00 |
|
ncbi-entrez-direct
|
biology/ncbi-entrez-direct: Update to 14.9.20210423_1
|
2021-04-26 11:53:11 -05:00 |
|
ncbi-toolkit
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ncbi-vdb
|
devel/libepoll-shim: update to 0.0.20210418
|
2021-04-26 14:17:32 +00:00 |
|
ngs-sdk
|
biology/ngs-sdk: Update 2.11.0-> 2.11.1
|
2021-08-18 10:17:44 -07:00 |
|
p5-AcePerl
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-ASN1-EntrezGene
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Cluster
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Coordinate
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Das
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Das-Lite
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-DB-EMBL
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-DB-NCBIHelper
|
biology/p5-Bio-DB-NCBIHelper: Update to 1.7.7
|
2021-07-06 22:56:10 +08:00 |
|
p5-Bio-FeatureIO
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-GFF3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Glite
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Graphics
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-MAGETAB
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-NEXUS
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Phylo
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-SCF
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Variation
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-BioPerl
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-BioPerl-Run
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-transdecoder
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
p5-TrimGalore
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
paml
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
pbbam
|
*: fix tab vs. space issues, and comments according to the guide.
|
2021-10-16 11:51:39 +02:00 |
|
pbseqan
|
*: fix tab vs. space issues, and comments according to the guide.
|
2021-10-16 11:51:39 +02:00 |
|
peak-classifier
|
biology/peak-classifier: Update to 0.1.1.21
|
2021-09-02 18:15:40 -05:00 |
|
pear-merger
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
phrap
|
Deorbit RESTRICTED && NO_CDROM, part two.
|
2021-05-06 13:47:48 +02:00 |
|
phred
|
Deorbit RESTRICTED && NO_CDROM, part two.
|
2021-05-06 13:47:48 +02:00 |
|
phyml
|
Clean up some things
|
2021-04-15 10:31:56 +02:00 |
|
picard-tools
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
plink
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pooler
|
biology/pooler: fix build on powerpc
|
2021-10-06 20:52:30 +00:00 |
|
primer3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
prodigal
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
prodigy-lig
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
protomol
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
psi88
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-biom-format
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-biopython
|
biology/py-biopython: Update to 1.79
|
2021-10-12 14:43:04 +08:00 |
|
py-bx-python
|
biology/py-bx-python: Update 0.8.10 -> 0.8.11-6
|
2021-08-17 12:10:45 -07:00 |
|
py-crossmap
|
biology/py-crossmap: chase ad5a0604c4
|
2021-10-14 00:53:16 +00:00 |
|
py-cutadapt
|
biology/py-cutadapt: Update strict py-dnaio dep version
|
2021-05-04 08:20:39 -05:00 |
|
py-deeptools
|
biology/py-deeptools: User-friendly tools for exploring deep-sequencing data
|
2021-10-14 06:51:12 -05:00 |
|
py-deeptoolsintervals
|
biology/py-deeptoolsintervals: Python interface for deepTools interval trees
|
2021-10-13 11:02:13 -05:00 |
|
py-dnaio
|
biology/py-dnaio: Update to 0.5.1
|
2021-05-04 08:19:25 -05:00 |
|
py-ete3
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-Genesis-PyAPI
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-gffutils
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-goatools
|
biology/py-goatools: Tools for processing and visualizing Gene Ontology terms
|
2021-07-02 12:00:29 -05:00 |
|
py-gtfparse
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-hits
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-libnuml
|
biology/py-libnuml: fix install with python 3.10+
|
2021-11-02 21:08:32 +03:00 |
|
py-libsedml
|
biology/py-libsedml: fix install with python 3.10+
|
2021-11-02 21:08:31 +03:00 |
|
py-loompy
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-macs2
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-multiqc
|
math/py-matplotlib: chase minimum Python version in dependent ports
|
2021-05-10 22:13:20 +02:00 |
|
py-ont-fast5-api
|
biology/py-ont-fast5-api: Interface to Oxford Nanopore .fast5 files
|
2021-08-13 08:34:09 -05:00 |
|
py-orange3-bioinformatics
|
biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1
|
2021-04-27 01:56:19 -07:00 |
|
py-orange3-single-cell
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-pandas-charm
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-py2bit
|
biology/py-py2bit: Python interface for 2bit packed nucleotide files
|
2021-10-13 07:53:53 -05:00 |
|
py-pybigwig
|
biology/py-bigwig: Rename to biology/py-pybigwig
|
2021-10-13 16:21:32 -05:00 |
|
py-pyfaidx
|
biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5
|
2021-04-23 14:57:50 -07:00 |
|
py-pysam
|
biology/py-pysam: limit supported python versions
|
2021-11-01 16:59:09 +03:00 |
|
py-PySCeS
|
biology/py-PySCeS: Update 0.9.8a -> 1.0.0
|
2021-09-20 14:34:22 -07:00 |
|
py-python-libsbml
|
biology/py-python-libsbml: limit supported python versions, fix build
|
2021-11-03 21:26:41 +03:00 |
|
py-pywgsim
|
biology/py-pywgsim: Modified wgsim genomic data simulator
|
2021-09-06 07:55:49 -05:00 |
|
py-resdk
|
biology/py-resdk: Update 13.6.0 -> 13.7.0
|
2021-11-17 22:33:39 -08:00 |
|
py-scikit-bio
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-xenaPython
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pyfasta
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
python-nexus
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rainbow
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
rampler
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
readseq
|
biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint
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2021-04-18 09:20:28 -05:00 |
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recombine
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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ruby-bio
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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rubygem-bio
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biology/rubygem-bio: Update to 2.0.2
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2021-07-01 04:44:06 +08:00 |
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rubygem-bio-executables
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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rubygem-bio-old-biofetch-emulator
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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rubygem-bio-shell
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biology/rubygem-bio-shell: Update to 1.0.1
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2021-11-22 02:21:58 +08:00 |
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sam2pairwise
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biology/sam2pairwise: Show pairwise alignment for each read in a SAM file
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2021-09-07 15:32:29 -05:00 |
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samtools
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biology/samtools: Update to 1.13
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2021-07-12 08:24:26 -05:00 |
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scrm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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seaview
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biology/seaview: in preparation to FLTK update, unbreak the port
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2021-08-14 08:58:03 +00:00 |
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seqan
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*/*: Remove redundant '-[0-9]*' from CONFLICTS
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2021-10-29 11:50:18 +02:00 |
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seqan-apps
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*/*: Remove compiler:openmp from Mk/Uses/compiler.mk
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2021-10-03 19:47:27 +02:00 |
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seqan1
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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seqan3
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biology/seqan3: Update 3.0.3 -> 3.1.0
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2021-11-14 21:18:53 -08:00 |
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seqio
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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seqkit
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biology/seqkit: Update 2.0.1 -> 2.1.0
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2021-11-16 10:57:47 -08:00 |
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seqtk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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sigviewer
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misc/: Update 0.99.6-2 -> 0.991
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2021-08-18 10:17:45 -07:00 |
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sim4
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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slclust
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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smithwaterman
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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snpeff
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biology/snpeff: Improvements to Makefile and patches
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2021-04-19 11:41:58 -05:00 |
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spoa
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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sra-tools
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biology/sra-tools: NCBI's toolkit for handling data in INSDC Sequence Read Archives
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2021-06-22 12:55:15 -05:00 |
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stacks
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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star
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biology/star: Update to 2.7.9a
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2021-11-26 15:57:02 -06:00 |
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stringtie
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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subread
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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tabixpp
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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taxonkit
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biology/taxonkit: Update 0.8.0 -> 0.9.0
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2021-12-02 12:57:06 -08:00 |
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treekin
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biology/treekin: Unbreak
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2021-10-15 08:50:24 -07:00 |
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treepuzzle
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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trimadap
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Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
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2021-10-25 12:58:29 +00:00 |
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trimmomatic
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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tRNAscan-SE
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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ucsc-userapps
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Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
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2021-10-25 12:58:29 +00:00 |
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ugene
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biology/ugene: update UniPro UGENE to version 40.1 (bugfix release).
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2021-10-14 11:23:37 +00:00 |
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unikmer
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biology/unikmer: Update 0.18.4 -> 0.18.8
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2021-09-26 01:54:07 -07:00 |
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vcf-split
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biology/vcf-split: Update to 0.1.2.14
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2021-08-27 20:30:52 -05:00 |
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vcf2hap
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biology/vcf2hap: Update to 0.1.3.12
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2021-08-27 20:32:51 -05:00 |
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vcflib
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biology/vcflib: Update to 1.0.2
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2021-11-04 09:23:17 -05:00 |
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vcftools
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biology/vcftools: Add CPE information
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2021-09-25 20:28:38 +00:00 |
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velvet
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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viennarna
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math/gsl: update to 2.7
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2021-06-16 21:31:27 +02:00 |
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vsearch
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Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
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2021-10-25 12:58:29 +00:00 |
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vt
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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wise
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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Makefile
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biology/gffread: GFF/GTF format conversions, filtering, FASTA extraction, etc
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2021-11-10 14:49:10 -06:00 |
