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ariadne
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Stage support
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2013-11-12 21:54:36 +00:00 |
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artemis
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Support stage
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2014-01-20 23:06:48 +00:00 |
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avida
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- Fix build with clang
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2013-11-27 16:07:51 +00:00 |
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babel
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Support stage
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2014-01-15 22:44:13 +00:00 |
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biococoa
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Update BioCocoa to the latest release.
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2013-10-08 18:34:45 +00:00 |
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biojava
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Unbreak
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2014-03-08 16:39:01 +00:00 |
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blast
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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blat
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Convert b* to USES=zip
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2014-03-07 15:52:40 +00:00 |
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boinc-simap
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Drop maintainership BOINC ports, old machine running them gave up.
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2014-02-04 17:54:29 +00:00 |
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chemeq
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Stage support
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2014-01-18 15:55:42 +00:00 |
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clustalw
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- Fix build with clang/libc++.
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2013-12-20 15:29:07 +00:00 |
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consed
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Remove trailing whitespaces from category biology
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2014-02-21 13:35:26 +00:00 |
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crux
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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embassy
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Reduce over inclusion of bsd.port.mk
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2014-01-15 22:48:32 +00:00 |
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emboss
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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fasta
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- Add staging support
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2014-03-24 09:01:39 +00:00 |
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fasta3
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biology/fasta3: Checked new distfile and regenerated distinfo to unbreak
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2014-03-02 10:58:50 +00:00 |
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fastdnaml
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Support staging
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2014-02-16 11:32:43 +00:00 |
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finchtv
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Deprecate: Broken for more than 6 months
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2014-03-18 18:10:25 +00:00 |
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fluctuate
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Support staging
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2014-02-16 11:35:00 +00:00 |
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garlic
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- Convert USE_GMAKE to USES
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2014-03-13 07:41:34 +00:00 |
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genpak
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Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained since more than 12 years)
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2014-03-08 22:26:21 +00:00 |
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gff2ps
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Add staging support
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2014-03-23 17:43:41 +00:00 |
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gmap
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Support stage
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2013-12-10 17:21:46 +00:00 |
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gperiodic
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Add staging support
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2014-03-23 18:09:23 +00:00 |
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grappa
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- Respect CC/CFLAGS
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2013-12-20 13:27:13 +00:00 |
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hmmer
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Stage support
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2013-12-30 18:08:14 +00:00 |
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iolib
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Support stage
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2014-01-20 17:02:11 +00:00 |
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jalview
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Fix properties on pkg-plist
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2014-01-21 23:18:05 +00:00 |
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lagan
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- Fix build
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2013-11-27 13:16:47 +00:00 |
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lamarc
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- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk
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2013-12-30 20:55:18 +00:00 |
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libgenome
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Deprecate a few old unmaintained ports
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2014-03-11 21:21:14 +00:00 |
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libsbml
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Convert b* to USES=zip
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2014-03-07 15:52:40 +00:00 |
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linux-foldingathome
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Add NO_STAGE all over the place in preparation for the staging support (cat: biology)
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2013-09-20 15:55:44 +00:00 |
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mafft
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- Convert USE_GMAKE to USES
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2014-03-13 07:41:34 +00:00 |
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mapm3
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- Fix build with clang
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2014-01-12 19:07:28 +00:00 |
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migrate
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- Stagify; cleanup Makefile and reorder the knobs a bit
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2014-01-29 12:08:29 +00:00 |
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molden
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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mopac
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- Add staging support
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2014-03-23 18:10:41 +00:00 |
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mrbayes
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Support stage
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2013-12-10 17:54:12 +00:00 |
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mummer
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- Convert USE_GMAKE to USES
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2014-03-13 07:41:34 +00:00 |
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muscle
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- Convert USE_GMAKE to USES
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2014-03-13 07:41:34 +00:00 |
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ncbi-toolkit
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Add staging support
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2014-03-23 20:50:54 +00:00 |
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njplot
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Remove trailing whitespaces from category biology
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2014-02-21 13:35:26 +00:00 |
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ortep3
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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p5-AcePerl
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- Stage support
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2014-02-10 06:56:52 +00:00 |
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p5-Bio-ASN1-EntrezGene
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- add stage support
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2014-01-06 09:57:19 +00:00 |
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p5-Bio-Das
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- support stage
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2014-01-05 12:07:20 +00:00 |
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p5-Bio-Das-Lite
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- fix pkg-plist
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2014-01-30 07:34:25 +00:00 |
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p5-Bio-GFF3
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- Update to 1.9
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2014-01-23 03:28:37 +00:00 |
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p5-Bio-Glite
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- support stage
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2014-01-05 12:07:20 +00:00 |
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p5-Bio-Graphics
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Add NO_STAGE all over the place in preparation for the staging support (cat: biology)
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2013-09-20 15:55:44 +00:00 |
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p5-Bio-MAGETAB
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- Update to 1.28
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2013-11-28 15:05:08 +00:00 |
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p5-Bio-NEXUS
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- Stage support
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2014-01-31 12:47:06 +00:00 |
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p5-Bio-Phylo
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- support stage
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2014-01-05 12:07:20 +00:00 |
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p5-Bio-SCF
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- add stage support
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2014-01-06 09:44:19 +00:00 |
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p5-bioperl
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Remove trailing whitespaces from category biology
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2014-02-21 13:35:26 +00:00 |
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p5-bioperl-run
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Remove trailing whitespaces from category biology
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2014-02-21 13:35:26 +00:00 |
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paml
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Support staging
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2014-03-14 12:59:33 +00:00 |
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phd2fasta
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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phrap
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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phred
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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phylip
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- Add staging support
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2014-03-23 21:52:54 +00:00 |
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phyml
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- Stage support
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2014-01-31 12:32:55 +00:00 |
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platon
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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plink
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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plinkseq
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Convert to dos2unix
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2014-03-07 11:37:35 +00:00 |
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povchem
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Convert to USES=dos2unix
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2013-11-18 13:45:44 +00:00 |
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primer3
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Support staging
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2014-03-14 12:35:03 +00:00 |
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protomol
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Reduce over inclusion of bsd.port.mk
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2014-01-15 22:51:26 +00:00 |
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psi88
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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py-biopython
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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pycogent
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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pyfasta
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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pymol
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- Convert USE_GMAKE to USES
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2014-03-13 07:41:34 +00:00 |
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python-nexus
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- Convert to PYDISTUTILS_AUTOPLIST
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2014-01-31 12:30:39 +00:00 |
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rasmol
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Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained since more than 12 years)
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2014-03-08 22:26:21 +00:00 |
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recombine
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- Support staging
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2014-02-16 11:39:42 +00:00 |
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ruby-bio
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Reduce over inclusion of bsd.port.mk
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2014-01-15 22:52:28 +00:00 |
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seaview
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- Stage support
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2014-02-27 08:46:42 +00:00 |
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seqan
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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seqio
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Support staging
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2014-02-16 11:42:09 +00:00 |
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seqtools
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Fix old makeplist bug.
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2014-02-12 14:03:25 +00:00 |
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sim4
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Support staging
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2014-02-16 11:43:07 +00:00 |
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ssaha
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biology/ssaha: undeprecate, this port fetches and builds fine.
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2014-03-09 09:39:50 +00:00 |
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t_coffee
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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tinker
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Update the default version of GCC used in the Ports Collection from
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2014-03-10 20:55:20 +00:00 |
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treepuzzle
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- Remove NO_STAGE as these have been tested to be safe
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2013-09-25 00:54:08 +00:00 |
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treeviewx
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Stage support
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2013-12-30 18:27:32 +00:00 |
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tRNAscan-SE
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biology/tRNAscan-SE: Fix hardcoded perl path
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2014-02-05 23:44:50 +00:00 |
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ugene
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Update to version 1.13.1.
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2014-03-07 07:39:20 +00:00 |
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velvet
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- Convert USE_GMAKE to USES
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2014-03-13 07:41:34 +00:00 |
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wise
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- Add staging support
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2014-03-24 10:46:35 +00:00 |
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xmolwt
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Add staging support
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2014-03-24 11:06:56 +00:00 |
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Makefile
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biology/seqtools: Tools for visualising sequence alignments
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2013-11-10 11:01:02 +00:00 |
