ecd280d820
PLINK is a free, open-source whole genome association analysis toolset. PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. PR: ports/171918 [1] PR: ports/171922 [2] Submitted by: Jason Bacon <jwbacon at tds.net>
52 lines
1.1 KiB
Text
52 lines
1.1 KiB
Text
--- Makefile.orig 2009-10-10 11:00:20.000000000 -0500
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+++ Makefile 2012-09-07 08:24:26.000000000 -0500
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@@ -26,7 +26,7 @@
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WITH_WEBCHECK = 1
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FORCE_32BIT =
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WITH_ZLIB = 1
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-WITH_LAPACK =
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+WITH_LAPACK = 1
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FORCE_DYNAMIC =
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# Put C++ compiler here; Windows has it's own specific version
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@@ -34,17 +34,17 @@
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CXX_WIN = c:\bin\mingw\bin\mingw32-g++.exe
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# Any other compiler flags here ( -Wall, -g, etc)
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-CXXFLAGS =
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+# CXXFLAGS =
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# Misc
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-LIB_LAPACK = /usr/lib/liblapack.so.3
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+LIB_LAPACK = -L${LOCALBASE}/lib -llapack -lblas -lgfortran
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# --------------------------------------------------------------------
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# Do not edit below this line
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# --------------------------------------------------------------------
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-CXXFLAGS += -O3 -I.
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+CXXFLAGS += -I.
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OUTPUT = plink
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# Some system specific flags
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@@ -58,8 +58,8 @@
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endif
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ifeq ($(SYS),UNIX)
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- CXXFLAGS += -DUNIX
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- CXX = $(CXX_UNIX)
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+ CXXFLAGS += -DUNIX -Dfopen64=fopen
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+ CXX ?= $(CXX_UNIX)
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ifndef FORCE_DYNAMIC
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CXXFLAGS += -static
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endif
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@@ -128,7 +128,7 @@
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LIB += -ldl
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endif
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ifeq ($(SYS),UNIX)
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-LIB += -ldl -lcrypt
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+LIB += -lcrypt
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endif
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endif
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