bdd2d4af96
Update the CONFLICTS definitions of ports in the following categories: - accessibility - archivers - audio - benchmarks - biology - cad - chinese - comms - converters An attempt has been made to use generic conflicts patterns that do not have to be updated whenever a new version of a conflicting port is added to the ports system. There is a misunderstanding that the port being built/installed has to be omitted from the conflicts pattern. This is not true - the port being built is implicitly non-conflicting due to logic in bsd.port.mk. Approved by: portmgr (implicit)
35 lines
745 B
Makefile
35 lines
745 B
Makefile
PORTNAME= picard
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DISTVERSION= 2.22.9
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CATEGORIES= biology java
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MASTER_SITES= http://github.com/broadinstitute/picard/releases/download/${PORTVERSION}/
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PKGNAMESUFFIX= -tools
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DISTNAME= ${PORTNAME}
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EXTRACT_SUFX= .jar
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= CLI tools for manipulating high-throughput sequencing (HTS) data
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LICENSE= MIT
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RUN_DEPENDS= samtools:biology/samtools
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USE_JAVA= 1.8+
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JAVA_RUN= yes
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CONFLICTS_INSTALL= picard # bin/picard
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SUB_FILES= picard
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NO_BUILD= yes
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NO_ARCH= yes
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PLIST_FILES= bin/picard ${JAVAJARDIR}/picard.jar
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do-extract:
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# No extract
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do-install:
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${INSTALL_DATA} ${DISTDIR}/${DISTNAME}${EXTRACT_SUFX} \
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${STAGEDIR}${JAVAJARDIR}
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${INSTALL_SCRIPT} ${WRKDIR}/picard ${STAGEDIR}${PREFIX}/bin
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.include <bsd.port.mk>
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