157 lines
4.6 KiB
Makefile
157 lines
4.6 KiB
Makefile
# $FreeBSD$
|
|
|
|
PORTNAME= afni
|
|
DISTVERSIONPREFIX= AFNI_
|
|
DISTVERSION= 20.2.13
|
|
CATEGORIES= science biology graphics perl5 python
|
|
|
|
MAINTAINER= ports@FreeBSD.org
|
|
COMMENT= Advanced Functional Neuro Imaging
|
|
|
|
LICENSE= GPLv2
|
|
|
|
BROKEN_powerpc64= fails to compile: ./predicates_init.c:46: error: implicit declaration of function 'fpsetprec'
|
|
|
|
CRAN_DEPENDS= R-cran-lme4>0:math/R-cran-lme4 \
|
|
R-cran-snow>0:science/R-cran-snow \
|
|
R-cran-psych>0:math/R-cran-psych
|
|
BUILD_DEPENDS= gm4:devel/m4 \
|
|
R:math/R \
|
|
${CRAN_DEPENDS}
|
|
LIB_DEPENDS= libexpat.so:textproc/expat2 \
|
|
libf2c.so:lang/f2c \
|
|
libgsl.so:math/gsl \
|
|
libnetcdff.so:science/netcdf-fortran \
|
|
libxml2.so:textproc/libxml2 \
|
|
libXm.so:x11-toolkits/open-motif \
|
|
libnetpbm.so:graphics/netpbm
|
|
# Remote execution of suma. Also needed for glxinfo.
|
|
RUN_DEPENDS= endian:sysutils/endian \
|
|
mpeg_encode:multimedia/mpeg_encode \
|
|
qhull:math/qhull5 \
|
|
R:math/R \
|
|
${CRAN_DEPENDS}
|
|
|
|
USES= compiler:openmp gettext gl gmake gnome iconv jpeg:run motif
|
|
USES+= perl5 python shebangfix tar:xz xorg
|
|
USE_GITHUB= yes
|
|
USE_GL= gl glu
|
|
USE_GNOME= glib20
|
|
USE_XORG= x11 xext xi xmu xt
|
|
|
|
SHEBANG_FILES= scripts_install/* \
|
|
python_scripts/afnipy/*.py \
|
|
python_scripts/scripts/*.py \
|
|
jzosky/*.py \
|
|
jzosky/lib_RetroTS/*.py \
|
|
discoraj/ClusterExplorer/*.py \
|
|
roopchansinghv/PsychoPy-NeuroFeedback-Demo/*.py \
|
|
roopchansinghv/PsychoPy-NeuroFeedback-Demo/*/*.py \
|
|
pkundu/*.py \
|
|
pkundu/meica.libs/*.py \
|
|
pkundu/meica.libs/*/*.py \
|
|
pkundu/meica.libs/*/*/*.py
|
|
|
|
MAKE_ENV= CC="${CC}" R_SHARE_DIR=${LOCALBASE}/lib/R/share
|
|
MAKE_JOBS_UNSAFE=yes
|
|
|
|
ALL_TARGET= vastness suma
|
|
|
|
###########################################################################
|
|
# Install parameters
|
|
|
|
SUB_FILES= pkg-message afni.cshrc afni.profile
|
|
|
|
INSTALL_WRKSRC= ${WRKSRC}/BSD
|
|
WRKSRC_SUBDIR= src
|
|
|
|
OPTIONS_DEFINE= DOCS
|
|
|
|
INSTALL_TMP= ${INSTALL_WRKSRC}-temp
|
|
PRESTAGE= ${WRKSRC}/prestage
|
|
|
|
.include <bsd.port.options.mk>
|
|
|
|
CONFLICTS= im-[0-9]* \
|
|
nifticlib-[0-9]* \
|
|
open-usp-tukubai-[0-9]*
|
|
|
|
X11R6_FILES= coxplot/Makefile \
|
|
coxplot/Makefile.f2c
|
|
|
|
post-extract:
|
|
.for f in ${X11R6_FILES}
|
|
@${REINPLACE_CMD} \
|
|
-e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
|
|
.endfor
|
|
@${REINPLACE_CMD} \
|
|
-E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
|
|
@${CP} ${FILESDIR}/Makefile ${WRKSRC}
|
|
@${RM} ${WRKSRC}/3DEdge/src/Makefile.orig
|
|
|
|
pre-configure:
|
|
@${REINPLACE_CMD} -e "s|-lglib|-lglib-2.0|g" \
|
|
${WRKSRC}/SUMA/SUMA_Makefile
|
|
@${REINPLACE_CMD} \
|
|
-e 's|os\.path\.dirname(os\.path\.abspath(os\.path\.expanduser(sys\.argv\[0\])))|"${DATADIR}"|g' \
|
|
${WRKSRC}/pkundu/meica.py
|
|
|
|
do-install:
|
|
# AFNI install just dumps everything into one flat directory
|
|
# ${WRKSRC}/BSD == ${INSTALL_WRKSRC}.
|
|
# Preserve ${INSTALL_WRKSRC} and make a sacrificial temp copy
|
|
# to be pruned and rearranged for easy staging
|
|
@${RM} -r ${INSTALL_TMP}
|
|
@${CP} -R ${INSTALL_WRKSRC} ${INSTALL_TMP}
|
|
|
|
# Clean up and organize files into ${PRESTAGE}, destroying
|
|
# ${INSTALL_TMP} in the process
|
|
@${RM} -rf ${PRESTAGE}
|
|
@${MKDIR} ${PRESTAGE}/bin \
|
|
${PRESTAGE}/scripts \
|
|
${PRESTAGE}/lib \
|
|
${PRESTAGE}/include \
|
|
${PRESTAGE}/trash \
|
|
${PRESTAGE}/doc \
|
|
${PRESTAGE}/share \
|
|
${PRESTAGE}/pylib
|
|
@${RM} ${INSTALL_TMP}/libf2c.a
|
|
@${MV} ${INSTALL_TMP}/meica.libs \
|
|
${INSTALL_TMP}/shiny \
|
|
${INSTALL_TMP}/lib_RetroTS \
|
|
${INSTALL_TMP}/funstuff \
|
|
${INSTALL_TMP}/AFNI.*rc \
|
|
${INSTALL_TMP}/afnigui* \
|
|
${PRESTAGE}/share
|
|
@${MV} ${INSTALL_TMP}/*.a \
|
|
${INSTALL_TMP}/*.so \
|
|
${PRESTAGE}/lib
|
|
@${MV} ${INSTALL_TMP}/*.h ${PRESTAGE}/include
|
|
@${MV} ${INSTALL_TMP}/afnipy ${INSTALL_TMP}/afniRTI ${PRESTAGE}/pylib
|
|
@${CP} ${WRKDIR}/afni-AFNI_${PORTVERSION}/doc/README/* ${PRESTAGE}/doc
|
|
@for binary in `${FILE} ${INSTALL_TMP}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
|
|
${MV} $${binary} ${PRESTAGE}/bin ; \
|
|
done
|
|
@${MV} ${INSTALL_TMP}/* ${PRESTAGE}/scripts
|
|
|
|
# Install to STAGEDIR using proper ports tools
|
|
@${MKDIR} \
|
|
${STAGEDIR}${DATADIR} \
|
|
${STAGEDIR}${PREFIX}/lib/afni \
|
|
${STAGEDIR}${PREFIX}/include/afni \
|
|
${STAGEDIR}${DOCSDIR} \
|
|
${STAGEDIR}${PREFIX}/etc/mri
|
|
${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin
|
|
${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin
|
|
(cd ${PRESTAGE}/pylib && \
|
|
${COPYTREE_SHARE} . ${STAGEDIR}${PYTHON_SITELIBDIR})
|
|
${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni
|
|
${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni
|
|
(cd ${PRESTAGE}/share && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR})
|
|
${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
|
|
${STAGEDIR}${PREFIX}/etc/mri
|
|
|
|
do-install-DOCS-on:
|
|
${INSTALL_DATA} ${PRESTAGE}/doc/* ${STAGEDIR}${DOCSDIR}
|
|
|
|
.include <bsd.port.mk>
|