101 lines
2.9 KiB
Makefile
101 lines
2.9 KiB
Makefile
# Created by: Hannes Hauswedell <h2+fbsdports@fsfe.org>
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# $FreeBSD$
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PORTNAME= ugene
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DISTVERSION= 1.13.1
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CATEGORIES= biology
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MASTER_SITES= http://ugene.unipro.ru/downloads/
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DISTFILES= ${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \
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UniproUGENE_UserManual.pdf WorkflowDesigner_UserManual.pdf
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DIST_SUBDIR= ${PORTNAME}
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EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
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MAINTAINER= h2+fbsdports@fsfe.org
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COMMENT= Free, open-source, cross-platform bioinformatics toolkit
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LICENSE= GPLv2
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RUN_DEPENDS= bash:${PORTSDIR}/shells/bash
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USES= qmake execinfo
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USE_GL= glu
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USE_QT4= gui webkit xml svg linguist_build moc_build qmake_build \
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qtestlib_build rcc_build uic_build imageformats_run \
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scripttools_build
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USE_XORG= xtst
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USE_LDCONFIG= yes
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INSTALLS_ICONS= yes
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QMAKE_ARGS= INSTALL_PREFIX=${PREFIX} UGENE_INSTALL_DATA=${DATADIR} \
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INSTALL_MANDIR=${MAN1PREFIX}/man
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ALL_TARGET= release
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DOCSDIR= ${DATADIR}/manuals
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OPTIONS_DEFINE= DOCS
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DOCS_DESC= Install official UGENE documentation (PDF)
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.include <bsd.port.pre.mk>
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# Required for Google Test code
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.if ${OSVERSION} > 1000054
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CXXFLAGS+= -std=c++11
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.endif
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.if ${ARCH} == "amd64"
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# XXX: need to manually tell the build we are on x64
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QMAKE_ARGS+= CONFIG+=x64
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PLIST_SUB= NOX64="@comment "
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.else
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PLIST_SUB= NOX64=""
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.endif
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.if ${MACHINE_CPU:Msse2}
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QMAKE_ARGS+= UGENE_SSE2_DETECTED=1
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.endif
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post-extract:
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${CP} -p ${_DISTDIR}/*.pdf ${WRKSRC}/data/manuals
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post-patch:
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# yes, bash is required, stuff will not execute with sh
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@${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' \
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${WRKSRC}/src/gen_bin_script.cmd \
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${WRKSRC}/installer/_common_data/ugene
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@${REINPLACE_CMD} -e '30s|^|#include <time.h>|' \
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${WRKSRC}/src/plugins/dbi_bam/src/BAMDbiPlugin.h
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@${REINPLACE_CMD} -e 's|runTime=NULL|runTime=0|' \
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${WRKSRC}/src/plugins/test_runner/src/TestViewReporter.h
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@${REINPLACE_CMD} -e 's|Q_OS_LINUX|Q_OS_UNIX|' \
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${WRKSRC}/src/ugenem/src/main.cpp
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@(cd ${WRKSRC}/src/plugins/external_tool_support/src && \
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${REINPLACE_CMD} -e 's/LINUX) || defined(Q_OS_MAC/UNIX/' \
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ExternalToolSupportPlugin.cpp \
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R/RSupport.cpp \
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blast/BlastAllSupport.cpp \
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blast/FormatDBSupport.cpp \
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blast_plus/BlastDBCmdSupport.cpp \
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blast_plus/BlastPlusSupport.cpp \
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bowtie/BowtieSupport.cpp \
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bowtie2/Bowtie2Support.cpp \
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bwa/BwaSupport.cpp \
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cap3/CAP3Support.cpp \
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clustalo/ClustalOSupport.cpp \
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clustalw/ClustalWSupport.cpp \
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cufflinks/CufflinksSupport.cpp \
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mrbayes/MrBayesSupport.cpp \
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perl/PerlSupport.cpp \
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python/PythonSupport.cpp \
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samtools/BcfToolsSupport.cpp \
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samtools/SamToolsExtToolSupport.cpp \
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spidey/SpideySupport.cpp \
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tcoffee/TCoffeeSupport.cpp \
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tophat/TopHatSupport.cpp \
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utils/ExternalToolSearchTask.cpp)
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post-configure:
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@${REINPLACE_CMD} -e '/^LFLAGS/s,-pthread,-lexecinfo &,' \
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${WRKSRC}/src/ugenecl/Makefile.Release \
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${WRKSRC}/src/ugeneui/Makefile.Release
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.include <bsd.port.post.mk>
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