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Nikolai Lifanov be3b7a5a79 add science/libgeodecomp - auto-parallelizing library for computer simulations 
LibGeoDecomp (Library for Geometric Decomposition codes) is an
auto-parallelizing library for computer simulations. It is specifically targeted
computational science applications in the context of supercomputers and
heterogeneous systems. The library eases development of such tightly coupled
codes by essentially taking over the parallel programming: it handles both, the
parallelization itself and parameter tuning. This enables scientists to focus on
their simulation code, rather than the technical details of the parallel
computer.

PR:		213688
Submitted by:	Kurt Kanzenbach <kurt@kmk-computers.de>
Reviewed by:	matthew
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D9390
2017-01-31 23:37:58 +00:00
..
2d-rewriter - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
afni science/afni: Use BUILD_DEPENDS/RUN_DEPENDS instead of LIB_DEPENDS for 2016-11-29 21:15:41 +00:00
avogadro devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
bddsolve devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
bft
bodr Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
brian math/py-numpy: track PORTEPOCH in consumers 2016-10-28 17:13:24 +00:00
buddy
cdcl Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
cdf Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
cdo - Add UUID option 2016-12-17 12:57:36 +00:00
cgnslib Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
cgribex Add JASPER and SZLIB options 2017-01-29 16:04:48 +00:00
checkmol Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
chemical-mime-data Use USES=pathfix where applicable. 2016-10-21 15:21:13 +00:00
chemtool Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
chemtool-devel Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
clhep - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
colt The output of tools like awk, date, sort, tr,... depends on the current 2017-01-18 13:20:31 +00:00
crf++ Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
dcl Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
devisor
dlpoly-classic Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
ecs Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
epte science/epte: Add forgetten patch hunk from previous commit 2016-08-28 05:56:01 +00:00
fastcap Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fasthenry Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fisicalab Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
fvcom-mpi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvm Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
gchemutils Update gchemutils to 0.14.16. 2016-12-31 19:43:21 +00:00
getdp getdp builds fine with bsd make 2016-12-10 18:38:34 +00:00
ghemical Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
ghmm - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
gnudatalanguage Upgrade GDL to 0.9.7v2. 2017-01-15 18:34:52 +00:00
gramps science/gramps: Update to 4.2.5 2016-12-19 12:52:40 +00:00
grib_api Update to 1.19.0 2017-01-02 15:11:27 +00:00
gromacs devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
gsmc Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
gtamsanalyzer
gwyddion Most commonly used build systems support silent builds, when they 2016-09-09 19:42:46 +00:00
h5utils - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
harminv Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf5 Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hdf5-18 Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
hs-bio
InsightToolkit Fix pkg-plist post r424008 2016-10-15 14:07:24 +00:00
isaac-cfd Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
jstrack Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
kalzium Introduce new extensible virtual categories for KDE 2016-10-18 17:22:35 +00:00
kst2 Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
lamprop
libaec Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
libctl Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
libgeodecomp add science/libgeodecomp - auto-parallelizing library for computer simulations 2017-01-31 23:37:58 +00:00
libghemical Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
libint Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-11-20 09:38:08 +00:00
libkml Update to 1.3.0 2017-01-12 20:02:17 +00:00
liblinear - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
liboglappth
libquantum Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
libsvm When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
libsvm-python
libxc - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
linsmith Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
massxpert Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-11-20 09:38:08 +00:00
mbdyn Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mcstas Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
mcstas-comps Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
medit Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
meep - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-11 10:08:38 +00:00
mei Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
metaf2xml The correct way to check for Perl's version is with PERL_LEVEL. 2016-10-27 17:21:09 +00:00
minc2 ${RM} already has -f. 2016-10-21 12:51:40 +00:00
mol2ps Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
mpb Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mpqc Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
mpqc-mpich
ncs Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
netcdf - Update to 4.4.1.1 2016-11-22 18:42:56 +00:00
netcdf-cxx - Update to 4.3.0 2016-05-15 16:12:00 +00:00
netcdf-fortran Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
nifticlib Pass -fPIC when building the port's static libraries. 2016-12-28 14:54:37 +00:00
openbabel science/openbabel: unbreak with GCC >= 6 2017-01-21 23:12:18 +00:00
openkim Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
orthanc devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-dicomweb devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-postgresql devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
orthanc-webviewer devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
p5-Algorithm-SVMLight Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements - Update to 1.071 2016-12-31 13:34:26 +00:00
p5-Chemistry-File-MDLMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
p5-Chemistry-Mol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-BUFR - Update to 1.36 2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
p5-PerlMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Physics-Unit Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
paje
paraview - Update to 5.2.0 2017-01-10 10:59:01 +00:00
pnetcdf Update to 1.8.1 2017-01-30 21:42:17 +00:00
psychopy Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
pulseview devel/boost-*: update to 1.63.0 2017-01-06 08:45:03 +00:00
py-cdo - Update to 1.3.2 2016-11-19 17:07:10 +00:00
py-coards Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-DendroPy Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-h5py - Remove bogus NO_ARCH: this module installs .so files 2016-11-24 14:57:16 +00:00
py-hcluster - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
py-mdp science/py-mdp: Update version 3.3=>3.5 2016-04-10 19:04:12 +00:00
py-mlpy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-netCDF4 - Update to 1.10.0 2016-04-20 20:42:39 +00:00
py-obspy - Update sqlalchemy dependency 2016-12-12 02:28:44 +00:00
py-paida Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-pupynere Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-pyaixi Convert CC license names to r421995 spellings 2016-09-28 06:38:00 +00:00
py-pydicom Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
py-pysal - Update to 1.13.0 2016-12-12 20:58:04 +00:00
py-pyteomics Update to 3.4 2016-12-01 23:52:38 +00:00
py-pyteomics.biolccc Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
py-scikit-fuzzy - Update to 0.2 2016-06-30 08:09:29 +00:00
py-scikit-learn Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-scikit-sparse Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-scimath Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scipy Bump PORTREVISIONS for ports depending on the canonical version of GCC and 2016-12-07 13:24:56 +00:00
py-ws2300 - Update to 1.10 2016-12-29 01:39:00 +00:00
pybrain - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
pycdf In several dozen ports, use single space for WWW: line in pkg-descr, and 2016-11-22 14:04:21 +00:00
pynn - Update to 0.8.2 2016-12-28 08:01:30 +00:00
qcl - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
qtresistors Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
R-cran-AMORE
R-cran-bayesm - Update to 3.0.2 2016-05-26 01:29:33 +00:00
R-cran-cmprsk
R-cran-DCluster Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.7 2016-10-15 04:49:01 +00:00
R-cran-epicalc
R-cran-etm
R-cran-snow - Update to 0.4-2 2016-10-16 04:21:12 +00:00
R-cran-som - Update to 0.3-5.1 2016-07-21 03:18:24 +00:00
rubygem-ai4r Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-cdo - Update to 1.3.2 2016-12-03 19:34:30 +00:00
rubygem-ruby-dcl Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf science/rubygem-ruby-netcdf: update to 0.7.2 2017-01-02 14:59:14 +00:00
sigrok-cli Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.4. 2016-11-03 18:30:42 +00:00
sigrok-firmware-utils Take maintainership. 2016-10-09 21:25:24 +00:00
silo Get rid of QT_PREFIX in favour of PREFIX. 2016-12-18 22:06:50 +00:00
simlib Fix some misspellings that crept in on the last tier-2 cleanup pass. 2016-11-16 09:29:15 +00:00
simsmith
step Introduce new extensible virtual categories for KDE 2016-10-18 17:22:35 +00:00
svmlight - With license framework, there's no longer need to shove license to docs, pkgmessage and restricted 2017-01-30 09:01:22 +00:00
szip Add libaec 1.0.0 2017-01-01 01:47:21 +00:00
tfel - Update to 2.0.4 2017-01-19 18:14:22 +00:00
udunits Update to 2.2.24 2017-01-25 16:31:27 +00:00
v_sim Change the site address. 2017-01-16 21:38:39 +00:00
veusz devel/py-qt4-core: change USE_PYQT from sip_build to sip to fix build 2016-06-14 18:18:54 +00:00
vmd science/vmd: correct the wording of numpy keyword 2017-01-09 06:03:05 +00:00
voro++
xfce4-equake-plugin Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/ 2017-01-20 20:33:30 +00:00
xmakemol - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
Makefile add science/libgeodecomp - auto-parallelizing library for computer simulations 2017-01-31 23:37:58 +00:00