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freebsd-ports/science
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Mark Linimon a07c7ab812 Fix some misspellings that crept in on the last tier-2 cleanup pass. 
Approved by:	portmgr (tier-2 blanket)
2016-11-16 09:29:15 +00:00
..
2d-rewriter - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
afni - Fix trailing whitespace in pkg-messages 2016-05-19 11:09:14 +00:00
avogadro Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
bddsolve many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
bft
bodr Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
brian math/py-numpy: track PORTEPOCH in consumers 2016-10-28 17:13:24 +00:00
buddy
cdcl
cdf - Bump port revision because of r423146. 2016-10-03 12:27:27 +00:00
cdo - Use USES=localbase 2016-04-23 06:46:51 +00:00
cgnslib - Update to 1.10.0 2016-04-20 20:42:39 +00:00
cgribex Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
checkmol Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
chemical-mime-data Use USES=pathfix where applicable. 2016-10-21 15:21:13 +00:00
chemtool Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
chemtool-devel Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
clhep science/clhep: Update version 2.2.0.8=>2.3.1.1 2016-04-10 21:01:55 +00:00
colt - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
crf++ Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
dcl
devisor
dlpoly-classic Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
ecs Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
epte science/epte: Add forgetten patch hunk from previous commit 2016-08-28 05:56:01 +00:00
fastcap Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fasthenry Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fisicalab Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom-mpi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvm science/fvm: remove optional knob on expired net/lam 2016-07-12 19:37:55 +00:00
gchemutils Mark various leaf ports broken on aarch64, and, where appropriate, other 2016-11-11 09:31:02 +00:00
getdp Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
ghemical - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
ghmm - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
gnudatalanguage Remove NLS, DOCS, EXAMPLES and IPV6 from OPTIONS_DEFAULT, they are enabled by default anyway and don't need to be listed 2016-05-23 20:35:01 +00:00
gramps science/gramps: Update to 4.2.4 2016-09-24 10:42:20 +00:00
grib_api - Update to 1.14.7 2016-04-17 18:40:09 +00:00
gromacs Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
gsmc - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
gtamsanalyzer
gwyddion Most commonly used build systems support silent builds, when they 2016-09-09 19:42:46 +00:00
h5utils - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
harminv - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
hdf many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
hdf5 - Fix build with 1.8.x installed 2016-04-23 06:46:55 +00:00
hdf5-18 Resurrect hdf5-18, because it is required by french/med and french/aster. 2016-11-13 12:32:46 +00:00
hs-bio
InsightToolkit Fix pkg-plist post r424008 2016-10-15 14:07:24 +00:00
isaac-cfd
jstrack - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
kalzium Introduce new extensible virtual categories for KDE 2016-10-18 17:22:35 +00:00
kst2 Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
lamprop
libctl Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
libghemical Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
libint - Update to version 1.1.6 2015-10-24 17:55:23 +00:00
libkml - Resolve conflict with archivers/minizip: rename libminizip to libkmlminizip 2016-04-07 13:28:46 +00:00
liblinear - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
liboglappth
libquantum Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
libsvm When there is a do-install target, do not use a post-install target, do 2016-07-19 11:04:13 +00:00
libsvm-python
libxc - Update to 3.0.0 2016-05-11 15:03:12 +00:00
linsmith Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
massxpert Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mbdyn - Update to version 1.7.1 [1] 2016-09-29 20:01:40 +00:00
mcstas - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
mcstas-comps - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
medit Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
meep - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
mei Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
metaf2xml The correct way to check for Perl's version is with PERL_LEVEL. 2016-10-27 17:21:09 +00:00
minc2 ${RM} already has -f. 2016-10-21 12:51:40 +00:00
mol2ps Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
mpb - Update to 1.10.0 2016-04-20 20:42:39 +00:00
mpqc Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mpqc-mpich
ncs science/ncs: remove optional build knob on expired net/lam 2016-07-12 19:38:30 +00:00
netcdf - Update to 1.10.0 2016-04-20 20:42:39 +00:00
netcdf-cxx - Update to 4.3.0 2016-05-15 16:12:00 +00:00
netcdf-fortran - Update to 4.4.4 2016-05-15 16:12:04 +00:00
nifticlib - Update maintainer mail address 2015-12-11 08:48:56 +00:00
openbabel Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
openkim - Update maintainer mail address 2015-12-11 08:48:56 +00:00
orthanc devel/google{test,mock}: update to 1.8.0.11 2016-11-15 01:41:12 +00:00
orthanc-dicomweb devel/google{test,mock}: update to 1.8.0.11 2016-11-15 01:41:12 +00:00
orthanc-postgresql devel/jsoncpp: bump portrevision for dependent ports for shlib change .0 -> .1 2016-05-17 18:01:15 +00:00
orthanc-webviewer devel/google{test,mock}: update to 1.8.0.11 2016-11-15 01:41:12 +00:00
p5-Algorithm-SVMLight Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
p5-Chemistry-Mol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-BUFR - Update to 1.34 2016-08-09 09:06:49 +00:00
p5-Geo-Coordinates-Converter Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
p5-PerlMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Physics-Unit
paje
paraview - Update to 1.10.0 2016-04-20 20:42:39 +00:00
pnetcdf Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
psychopy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
pulseview Take maintainership. 2016-10-09 21:25:24 +00:00
py-cdo Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-coards Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-DendroPy Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-h5py Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net 2016-06-15 09:04:29 +00:00
py-hcluster - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
py-mdp science/py-mdp: Update version 3.3=>3.5 2016-04-10 19:04:12 +00:00
py-mlpy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-netCDF4 - Update to 1.10.0 2016-04-20 20:42:39 +00:00
py-obspy - Update to 1.0.2 2016-08-08 09:29:31 +00:00
py-paida Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-pupynere Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-pyaixi Convert CC license names to r421995 spellings 2016-09-28 06:38:00 +00:00
py-pydicom - Fix build by removing unneeded patch 2016-11-15 12:05:46 +00:00
py-pysal math/py-numpy: track PORTEPOCH in consumers 2016-10-28 17:13:24 +00:00
py-pyteomics - Add LICENSE 2016-11-07 12:24:07 +00:00
py-pyteomics.biolccc Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
py-scikit-fuzzy - Update to 0.2 2016-06-30 08:09:29 +00:00
py-scikit-learn Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scikit-sparse Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scimath Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scipy - Update to 0.18.1 2016-10-06 09:52:39 +00:00
py-ws2300
pybrain - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
pycdf Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
pynn - Update to 0.8.1 2016-10-19 08:53:29 +00:00
qcl - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
qtresistors Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
R-cran-AMORE
R-cran-bayesm - Update to 3.0.2 2016-05-26 01:29:33 +00:00
R-cran-cmprsk - Add new port: science/R-cran-cmprsk 2015-11-08 05:46:50 +00:00
R-cran-DCluster Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.7 2016-10-15 04:49:01 +00:00
R-cran-epicalc
R-cran-etm - Add new port: science/R-cran-etm 2015-11-08 06:15:14 +00:00
R-cran-snow - Update to 0.4-2 2016-10-16 04:21:12 +00:00
R-cran-som - Update to 0.3-5.1 2016-07-21 03:18:24 +00:00
rubygem-ai4r Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-cdo Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-dcl Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
sigrok-cli Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.4. 2016-11-03 18:30:42 +00:00
sigrok-firmware-utils Take maintainership. 2016-10-09 21:25:24 +00:00
silo Cleanup no longer needed CHMOD usage after r424898. 2016-11-02 22:45:14 +00:00
simlib Fix some misspellings that crept in on the last tier-2 cleanup pass. 2016-11-16 09:29:15 +00:00
simsmith
step Introduce new extensible virtual categories for KDE 2016-10-18 17:22:35 +00:00
svmlight
szip
tfel MFront is a code generator which translates a set of closely related 2016-11-11 16:49:21 +00:00
udunits Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
v_sim Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
veusz devel/py-qt4-core: change USE_PYQT from sip_build to sip to fix build 2016-06-14 18:18:54 +00:00
vmd Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
voro++ - Update maintainer mail address 2015-12-11 08:48:56 +00:00
xfce4-equake-plugin
xmakemol - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
Makefile Resurrect hdf5-18, because it is required by french/med and french/aster. 2016-11-13 12:32:46 +00:00