3be3e90f93
- Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery)
42 lines
1,000 B
Makefile
42 lines
1,000 B
Makefile
# Created by: Johann Visagie <wjv@FreeBSD.org>
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# $FreeBSD$
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PORTNAME= t_coffee
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PORTVERSION= 9.03
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DISTVERSIONSUFFIX= .r1318
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PORTREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= http://www.tcoffee.org/Packages/Stable/%SUBDIR%/
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MASTER_SITE_SUBDIR= Version_${PORTVERSION}${DISTVERSIONSUFFIX}
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DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
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MAINTAINER= ports@FreeBSD.org
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COMMENT= A multiple DNA or protein sequence alignment package
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LICENSE= GPLv2
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RUN_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw
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OPTIONS_DEFINE= EXAMPLES
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BUILD_WRKSRC= ${WRKSRC}/t_coffee_source
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USE_FORTRAN= yes
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MAKE_ENV= FCC="${FC} ${FFLAGS}"
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MAKEFILE= makefile
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PORTEXAMPLES= *
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PLIST_FILES= bin/TMalign bin/t_coffee
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NO_STAGE= yes
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.include <bsd.port.options.mk>
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do-install:
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(cd ${BUILD_WRKSRC} \
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&& ${INSTALL_PROGRAM} TMalign t_coffee ${PREFIX}/bin)
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.if ${PORT_OPTIONS:MEXAMPLES}
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@${MKDIR} ${EXAMPLESDIR}
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@(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${EXAMPLESDIR})
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.endif
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.include <bsd.port.mk>
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