947a8e30b5
PR: ports/81579 Submitted by: "Choe, Cheng-Dae" <whitekid@gmail.com> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
1982 lines
79 KiB
Text
1982 lines
79 KiB
Text
bin/aaindexextract
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bin/abiview
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bin/acdc
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bin/acdpretty
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bin/acdtable
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bin/acdtrace
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bin/acdvalid
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bin/antigenic
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bin/backtranseq
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bin/banana
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bin/biosed
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bin/btwisted
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bin/cai
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bin/chaos
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bin/charge
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bin/checktrans
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bin/chips
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bin/cirdna
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bin/codcmp
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bin/coderet
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bin/compseq
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bin/cons
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bin/cpgplot
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bin/cpgreport
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bin/cusp
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bin/cutgextract
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bin/cutseq
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bin/dan
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bin/dbiblast
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bin/dbifasta
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bin/dbiflat
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bin/dbigcg
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bin/degapseq
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bin/descseq
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bin/diffseq
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bin/digest
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bin/distmat
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bin/dotmatcher
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bin/dotpath
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bin/dottup
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bin/dreg
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bin/einverted
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bin/embossdata
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bin/embossversion
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bin/emma
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bin/emowse
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bin/entret
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bin/epestfind
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bin/eprimer3
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bin/equicktandem
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bin/est2genome
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bin/etandem
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bin/extractfeat
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bin/extractseq
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bin/findkm
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bin/freak
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bin/fuzznuc
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bin/fuzzpro
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bin/fuzztran
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bin/garnier
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bin/geecee
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bin/getorf
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bin/helixturnhelix
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bin/hmoment
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bin/iep
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bin/infoalign
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bin/infoseq
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bin/isochore
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bin/jembossctl
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bin/lindna
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bin/listor
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bin/marscan
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bin/maskfeat
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bin/maskseq
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bin/matcher
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bin/megamerger
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bin/merger
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bin/msbar
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bin/mwcontam
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bin/mwfilter
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bin/needle
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bin/newcpgreport
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bin/newcpgseek
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bin/newseq
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bin/noreturn
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bin/notseq
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bin/nthseq
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bin/octanol
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bin/oddcomp
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bin/palindrome
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bin/pasteseq
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bin/patmatdb
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bin/patmatmotifs
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bin/pepcoil
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bin/pepinfo
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bin/pepnet
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bin/pepstats
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bin/pepwheel
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bin/pepwindow
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bin/pepwindowall
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bin/plotcon
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bin/plotorf
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bin/polydot
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bin/preg
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bin/prettyplot
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bin/prettyseq
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bin/primersearch
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bin/printsextract
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bin/profit
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bin/prophecy
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bin/prophet
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bin/prosextract
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bin/pscan
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bin/psiphi
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bin/rebaseextract
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bin/recoder
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bin/redata
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bin/remap
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bin/restover
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bin/restrict
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bin/revseq
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bin/runJemboss.csh
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bin/seealso
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bin/seqmatchall
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bin/seqret
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bin/seqretsplit
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bin/showalign
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bin/showdb
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bin/showfeat
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bin/showorf
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bin/showseq
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bin/shuffleseq
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bin/sigcleave
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bin/silent
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bin/sirna
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bin/sixpack
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bin/skipseq
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bin/splitter
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bin/stretcher
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bin/stssearch
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bin/supermatcher
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bin/syco
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bin/tcode
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bin/textsearch
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bin/tfextract
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bin/tfm
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bin/tfscan
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bin/tmap
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bin/tranalign
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bin/transeq
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bin/trimest
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bin/trimseq
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bin/twofeat
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bin/union
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bin/vectorstrip
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bin/water
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bin/whichdb
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bin/wobble
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bin/wordcount
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bin/wordmatch
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bin/wossname
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bin/yank
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etc/emboss.default.sample
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include/ajacd.h
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include/ajalign.h
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include/ajarch.h
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include/ajarr.h
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include/ajassert.h
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include/ajax.h
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include/ajbase.h
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include/ajcall.h
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include/ajcod.h
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include/ajdan.h
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include/ajdefine.h
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include/ajdmx.h
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include/ajdomain.h
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include/ajexcept.h
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include/ajfeat.h
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include/ajfeatdata.h
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include/ajfile.h
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include/ajfmt.h
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include/ajgraph.h
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include/ajgraphstruct.h
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include/ajgraphxml.h
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include/ajhist.h
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include/ajindex.h
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include/ajjava.h
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include/ajlist.h
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include/ajmath.h
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include/ajmatrices.h
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include/ajmem.h
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include/ajmess.h
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include/ajnam.h
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include/ajnexus.h
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include/ajpdb.h
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include/ajpdbio.h
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include/ajphylo.h
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include/ajrange.h
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include/ajreg.h
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include/ajreport.h
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include/ajseq.h
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include/ajseqabi.h
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include/ajseqdata.h
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include/ajseqdb.h
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include/ajseqread.h
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include/ajseqtype.h
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include/ajseqwrite.h
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include/ajsort.h
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include/ajstr.h
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include/ajsys.h
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include/ajtable.h
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include/ajtime.h
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include/ajtranslate.h
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include/ajtree.h
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include/ajutil.h
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include/ajvector.h
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include/drivers.h
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include/embaln.h
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include/embcom.h
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include/embcons.h
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include/embdata.h
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include/embdbi.h
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include/embdmx.h
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include/embdomain.h
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include/embest.h
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include/embexit.h
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include/embgroup.h
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include/embiep.h
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include/embindex.h
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include/embinit.h
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include/embmat.h
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include/embmisc.h
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include/embmol.h
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include/embnmer.h
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include/emboss.h
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include/embpat.h
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include/embpdb.h
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include/embprop.h
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include/embread.h
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include/embshow.h
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include/embsig.h
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include/embword.h
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include/metadefs.h
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include/pcre.h
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include/pcre_chartables.c
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include/pcre_config.h
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include/pcre_get.c
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include/pcre_internal.h
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include/pcre_printint.c
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include/pcreposix.h
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include/pdf.h
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include/plConfig.h
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include/plDevs.h
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include/plcore.h
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include/pldebug.h
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include/plevent.h
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include/plplot.h
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include/plplotP.h
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include/plstrm.h
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include/plxwd.h
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lib/libajax.a
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lib/libajax.so
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lib/libajax.so.1
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lib/libajaxg.a
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lib/libajaxg.so
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lib/libajaxg.so.1
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lib/libnucleus.a
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lib/libnucleus.so
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lib/libnucleus.so.1
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lib/libplplot.a
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lib/libplplot.so
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lib/libplplot.so.5
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%%DATADIR%%/acd/aaindexextract.acd
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%%DATADIR%%/acd/abiview.acd
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%%DATADIR%%/acd/acdc.acd
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%%DATADIR%%/acd/acdlog.acd
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%%DATADIR%%/acd/acdpretty.acd
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%%DATADIR%%/acd/acdtable.acd
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%%DATADIR%%/acd/acdtrace.acd
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%%DATADIR%%/acd/acdvalid.acd
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%%DATADIR%%/acd/ajbad.acd
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%%DATADIR%%/acd/ajfeatest.acd
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%%DATADIR%%/acd/ajtest.acd
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%%DATADIR%%/acd/antigenic.acd
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%%DATADIR%%/acd/backtranseq.acd
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%%DATADIR%%/acd/banana.acd
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%%DATADIR%%/acd/biosed.acd
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%%DATADIR%%/acd/btwisted.acd
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%%DATADIR%%/acd/cai.acd
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%%DATADIR%%/acd/chaos.acd
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%%DATADIR%%/acd/charge.acd
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%%DATADIR%%/acd/checktrans.acd
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%%DATADIR%%/acd/chips.acd
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%%DATADIR%%/acd/cirdna.acd
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%%DATADIR%%/acd/codcmp.acd
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%%DATADIR%%/acd/coderet.acd
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%%DATADIR%%/acd/codes.english
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%%DATADIR%%/acd/complex.acd
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%%DATADIR%%/acd/compseq.acd
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%%DATADIR%%/acd/cons.acd
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%%DATADIR%%/acd/corbatest.acd
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%%DATADIR%%/acd/cpgplot.acd
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%%DATADIR%%/acd/cpgreport.acd
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%%DATADIR%%/acd/cusp.acd
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%%DATADIR%%/acd/cutgextract.acd
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%%DATADIR%%/acd/cutseq.acd
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%%DATADIR%%/acd/dan.acd
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%%DATADIR%%/acd/dbiblast.acd
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%%DATADIR%%/acd/dbifasta.acd
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%%DATADIR%%/acd/dbiflat.acd
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%%DATADIR%%/acd/dbigcg.acd
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%%DATADIR%%/acd/degapseq.acd
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%%DATADIR%%/acd/demoalign.acd
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%%DATADIR%%/acd/demofeatures.acd
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%%DATADIR%%/acd/demolist.acd
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%%DATADIR%%/acd/demoreport.acd
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%%DATADIR%%/acd/demosequence.acd
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%%DATADIR%%/acd/demostring.acd
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%%DATADIR%%/acd/demotable.acd
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%%DATADIR%%/acd/descseq.acd
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%%DATADIR%%/acd/diffseq.acd
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%%DATADIR%%/acd/digest.acd
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%%DATADIR%%/acd/distmat.acd
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%%DATADIR%%/acd/dotmatcher.acd
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%%DATADIR%%/acd/dotpath.acd
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%%DATADIR%%/acd/dottup.acd
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%%DATADIR%%/acd/dreg.acd
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%%DATADIR%%/acd/einverted.acd
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%%DATADIR%%/acd/embossdata.acd
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%%DATADIR%%/acd/embossversion.acd
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%%DATADIR%%/acd/emma.acd
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%%DATADIR%%/acd/emowse.acd
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%%DATADIR%%/acd/entrails.acd
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%%DATADIR%%/acd/entret.acd
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%%DATADIR%%/acd/epestfind.acd
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%%DATADIR%%/acd/eprimer3.acd
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%%DATADIR%%/acd/equicktandem.acd
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%%DATADIR%%/acd/est2genome.acd
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%%DATADIR%%/acd/etandem.acd
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%%DATADIR%%/acd/extractfeat.acd
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%%DATADIR%%/acd/extractseq.acd
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%%DATADIR%%/acd/findkm.acd
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%%DATADIR%%/acd/freak.acd
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%%DATADIR%%/acd/fuzznuc.acd
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%%DATADIR%%/acd/fuzzpro.acd
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%%DATADIR%%/acd/fuzztran.acd
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%%DATADIR%%/acd/garnier.acd
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%%DATADIR%%/acd/geecee.acd
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%%DATADIR%%/acd/getorf.acd
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%%DATADIR%%/acd/giep.acd
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%%DATADIR%%/acd/groups.standard
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%%DATADIR%%/acd/helixturnhelix.acd
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%%DATADIR%%/acd/histogramtest.acd
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%%DATADIR%%/acd/hmoment.acd
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%%DATADIR%%/acd/iep.acd
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%%DATADIR%%/acd/infoalign.acd
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%%DATADIR%%/acd/infoseq.acd
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%%DATADIR%%/acd/intconv.acd
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%%DATADIR%%/acd/isochore.acd
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%%DATADIR%%/acd/kmrsplitter.acd
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%%DATADIR%%/acd/kmrunion.acd
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%%DATADIR%%/acd/knowntypes.standard
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%%DATADIR%%/acd/lindna.acd
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%%DATADIR%%/acd/listor.acd
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%%DATADIR%%/acd/marscan.acd
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%%DATADIR%%/acd/maskfeat.acd
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%%DATADIR%%/acd/maskseq.acd
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%%DATADIR%%/acd/matcher.acd
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%%DATADIR%%/acd/megamerger.acd
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%%DATADIR%%/acd/merger.acd
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%%DATADIR%%/acd/msbar.acd
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%%DATADIR%%/acd/mwcontam.acd
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%%DATADIR%%/acd/mwfilter.acd
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%%DATADIR%%/acd/needle.acd
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%%DATADIR%%/acd/newcoils.acd
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%%DATADIR%%/acd/newcpgreport.acd
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%%DATADIR%%/acd/newcpgseek.acd
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%%DATADIR%%/acd/newseq.acd
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%%DATADIR%%/acd/noreturn.acd
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%%DATADIR%%/acd/notseq.acd
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%%DATADIR%%/acd/nthseq.acd
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%%DATADIR%%/acd/octanol.acd
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%%DATADIR%%/acd/oddcomp.acd
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%%DATADIR%%/acd/palindrome.acd
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%%DATADIR%%/acd/pasteseq.acd
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%%DATADIR%%/acd/patmatdb.acd
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%%DATADIR%%/acd/patmatmotifs.acd
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%%DATADIR%%/acd/patmattest.acd
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%%DATADIR%%/acd/pepcoil.acd
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%%DATADIR%%/acd/pepinfo.acd
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%%DATADIR%%/acd/pepnet.acd
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%%DATADIR%%/acd/pepstats.acd
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%%DATADIR%%/acd/pepwheel.acd
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%%DATADIR%%/acd/pepwindow.acd
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%%DATADIR%%/acd/pepwindowall.acd
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%%DATADIR%%/acd/plotcon.acd
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%%DATADIR%%/acd/plotorf.acd
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%%DATADIR%%/acd/polydot.acd
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%%DATADIR%%/acd/preg.acd
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%%DATADIR%%/acd/prettyplot.acd
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%%DATADIR%%/acd/prettyseq.acd
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%%DATADIR%%/acd/prima.acd
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%%DATADIR%%/acd/primers.acd
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%%DATADIR%%/acd/primersearch.acd
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%%DATADIR%%/acd/printsextract.acd
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%%DATADIR%%/acd/profit.acd
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%%DATADIR%%/acd/prophecy.acd
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%%DATADIR%%/acd/prophet.acd
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%%DATADIR%%/acd/prosextract.acd
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%%DATADIR%%/acd/pscan.acd
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%%DATADIR%%/acd/psiphi.acd
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%%DATADIR%%/acd/rebaseextract.acd
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%%DATADIR%%/acd/recoder.acd
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%%DATADIR%%/acd/redata.acd
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%%DATADIR%%/acd/remap.acd
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%%DATADIR%%/acd/restover.acd
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%%DATADIR%%/acd/restrict.acd
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%%DATADIR%%/acd/revseq.acd
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%%DATADIR%%/acd/sections.standard
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%%DATADIR%%/acd/seealso.acd
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%%DATADIR%%/acd/seqinfo.acd
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%%DATADIR%%/acd/seqmatchall.acd
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%%DATADIR%%/acd/seqret.acd
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%%DATADIR%%/acd/seqretall.acd
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%%DATADIR%%/acd/seqretallfeat.acd
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%%DATADIR%%/acd/seqretset.acd
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%%DATADIR%%/acd/seqretsingle.acd
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%%DATADIR%%/acd/seqretsplit.acd
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%%DATADIR%%/acd/seqrettype.acd
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%%DATADIR%%/acd/showalign.acd
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%%DATADIR%%/acd/showdb.acd
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%%DATADIR%%/acd/showfeat.acd
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%%DATADIR%%/acd/showorf.acd
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%%DATADIR%%/acd/showseq.acd
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%%DATADIR%%/acd/shuffleseq.acd
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%%DATADIR%%/acd/sigcleave.acd
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%%DATADIR%%/acd/silent.acd
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%%DATADIR%%/acd/sirna.acd
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%%DATADIR%%/acd/sixpack.acd
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%%DATADIR%%/acd/skipseq.acd
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%%DATADIR%%/acd/splitter.acd
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%%DATADIR%%/acd/stretcher.acd
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%%DATADIR%%/acd/stssearch.acd
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%%DATADIR%%/acd/supermatcher.acd
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%%DATADIR%%/acd/syco.acd
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%%DATADIR%%/acd/tcode.acd
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%%DATADIR%%/acd/testplot.acd
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%%DATADIR%%/acd/textsearch.acd
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%%DATADIR%%/acd/tfextract.acd
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%%DATADIR%%/acd/tfm.acd
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%%DATADIR%%/acd/tfscan.acd
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%%DATADIR%%/acd/tmap.acd
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%%DATADIR%%/acd/tranalign.acd
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%%DATADIR%%/acd/transeq.acd
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%%DATADIR%%/acd/treetypedisplay.acd
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%%DATADIR%%/acd/trimest.acd
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%%DATADIR%%/acd/trimseq.acd
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%%DATADIR%%/acd/twofeat.acd
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%%DATADIR%%/acd/union.acd
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%%DATADIR%%/acd/variables.standard
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%%DATADIR%%/acd/vectorstrip.acd
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%%DATADIR%%/acd/water.acd
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%%DATADIR%%/acd/whichdb.acd
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%%DATADIR%%/acd/wobble.acd
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%%DATADIR%%/acd/wordcount.acd
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%%DATADIR%%/acd/wordmatch.acd
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%%DATADIR%%/acd/wossname.acd
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%%DATADIR%%/acd/yank.acd
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%%DATADIR%%/data/AAINDEX/dummyfile
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%%DATADIR%%/data/CODONS/Eacc.cut
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@dirrm %%DATADIR%%/test/wormpep
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@dirrm %%DATADIR%%/jemboss/api/org
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@dirrm %%DATADIR%%/jemboss/api
|
|
@dirrm %%DATADIR%%/jemboss
|
|
@dirrm %%DATADIR%%/data/REBASE
|
|
@dirrm %%DATADIR%%/data/PROSITE
|
|
@dirrm %%DATADIR%%/data/PRINTS
|
|
@dirrm %%DATADIR%%/data/CODONS
|
|
@dirrm %%DATADIR%%/data/AAINDEX
|
|
@dirrm %%DATADIR%%/data
|
|
@dirrm %%DATADIR%%/acd
|
|
@dirrm %%DATADIR%%
|