bdd2d4af96
Update the CONFLICTS definitions of ports in the following categories: - accessibility - archivers - audio - benchmarks - biology - cad - chinese - comms - converters An attempt has been made to use generic conflicts patterns that do not have to be updated whenever a new version of a conflicting port is added to the ports system. There is a misunderstanding that the port being built/installed has to be omitted from the conflicts pattern. This is not true - the port being built is implicitly non-conflicting due to logic in bsd.port.mk. Approved by: portmgr (implicit)
81 lines
2.6 KiB
Makefile
81 lines
2.6 KiB
Makefile
# Created by: tonym
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PORTNAME= ncbi-toolkit
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DISTVERSION= 2017.01.06 # containing BLAST v2.2.27 (? is this true)
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PORTREVISION= 6
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
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DISTNAME= ncbi
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DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
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LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \
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libgmp.so:math/gmp \
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libgnutls.so:security/gnutls \
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libhogweed.so:security/nettle \
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libidn2.so:dns/libidn2 \
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libnettle.so:security/nettle \
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libp11-kit.so:security/p11-kit \
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libpng.so:graphics/png \
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libtasn1.so:security/libtasn1 \
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libtspi.so:security/trousers \
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libunistring.so:devel/libunistring
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USES= gettext-runtime iconv jpeg motif xorg
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USE_XORG= x11 xau xext xft xmu xrender xt
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CONFLICTS_INSTALL= fhist ncbi-cxx-toolkit # bin/test_regexp man/man1/fmerge.1.gz
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SUB_FILES= pkg-message
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OPTIONS_DEFINE= DOCS
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post-patch:
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@${REINPLACE_CMD} -e \
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's|/usr/X11R6|${LOCALBASE}|g' ${WRKSRC}/make/makedis.csh
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@${REINPLACE_CMD} -e \
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'/^NCBI_CC/s|=.*|= ${CC}| ; \
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/^NCBI_LDFLGS1/s|=.*|= ${LDFLAGS}| ; \
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/^NCBI_OPTFLAG/s|= .*|= ${CFLAGS}| ; \
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/^NCBI_VIBLIBS/s|-lXp\ || ; \
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/^NCBI_DISTVIBLIBS/s|-lXp\ || ; \
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s|-I/usr/X11R6/include||g ; \
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s|-L/usr/X11R6/lib||g ; \
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s|/usr/local|${LOCALBASE}|g ; \
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s|-Wl,-Bstatic|| ; \
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s|-Wl,-Bdynamic||' ${WRKSRC}/platform/freebsd.ncbi.mk
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@${REINPLACE_CMD} -e 's/%%ICONV_LIB%%/${ICONV_LIB}/' \
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${WRKSRC}/make/makeall.unx ${WRKSRC}/make/makenet.unx
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# the ncbi-toolkit provides a shell script to drive the build
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# and we use it
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do-build:
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@cd ${WRKDIR} && ./${DISTNAME}/make/makedis.csh
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# the ncbi-toolkit does not provide an install target
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# we thus roll our own
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do-install:
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cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} * ${STAGEDIR}${PREFIX}/bin
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@${MKDIR} ${STAGEDIR}${PREFIX}/lib/${DISTNAME}
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cd ${WRKSRC}/lib && ${INSTALL_DATA} *.a \
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${STAGEDIR}${PREFIX}/lib/${DISTNAME}
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@${MKDIR} ${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect
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cd ${WRKSRC}/include && ${INSTALL_DATA} *.h \
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${STAGEDIR}${PREFIX}/include/${DISTNAME}
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cd ${WRKSRC}/include/connect && ${INSTALL_DATA} *.h \
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${STAGEDIR}${PREFIX}/include/${DISTNAME}/connect
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cd ${WRKSRC}/doc/man && ${INSTALL_MAN} * \
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${STAGEDIR}${MANPREFIX}/man/man1
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@${MKDIR} ${STAGEDIR}${DATADIR}
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cd ${WRKSRC}/data && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}
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do-install-DOCS-on:
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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@(cd ${WRKSRC}/doc && \
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${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} '-not ( -name man -o -path ./man\/* )')
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.include <bsd.port.mk>
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