43 lines
1.4 KiB
Makefile
43 lines
1.4 KiB
Makefile
# Created by: camson@bilateral.com.au
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PORTNAME= artemis
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DISTVERSIONPREFIX= v
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DISTVERSION= 17.0.1-11
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DISTVERSIONSUFFIX= -g3e43d27e
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CATEGORIES= biology java
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= DNA sequence viewer and annotation tool
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE
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RUN_DEPENDS= bash:shells/bash
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USES= gmake shebangfix
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USE_GITHUB= yes
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GH_ACCOUNT= sanger-pathogens
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SHEBANG_FILES= act art bamview dnaplotter test/*.sh etc/go_associations.pl
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USE_JAVA= yes
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ALL_TARGET= jar
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NO_ARCH= yes
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PLIST_SUB= PORTVERSION="${PORTVERSION}"
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post-extract:
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@cd ${WRKDIR} && ${MV} Artemis-${DISTVERSION}${DISTVERSIONSUFFIX} ${PORTNAME}-${DISTVERSION}${DISTVERSIONSUFFIX}
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do-install:
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@${MKDIR} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}
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.for f in jar_build lib etc images artemis_sqlmap
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@cd ${WRKSRC} && ${COPYTREE_SHARE} ${f} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}
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.endfor
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@cd ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION} && ${MV} jar_build jars
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.for f in art act bamview dnaplotter
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${INSTALL_SCRIPT} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}/${f}
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@${REINPLACE_CMD} -i '' -e 's|APPLICATION_HOME=.*|&/jars|' ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}/${f}
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@(${ECHO} "#!/bin/sh"; ${ECHO} ""; ${ECHO} "cd ${PREFIX}/${PORTNAME}-${PORTVERSION} && ./${f}") > ${STAGEDIR}${PREFIX}/bin/${f}
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@${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${f}
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.endfor
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.include <bsd.port.mk>
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