e44f917e29
ErmineJ performs analyses of gene sets in high-throughput genomics data such as gene expression profiling studies. A typical goal is to determine whether particular biological pathways are "doing something interesting" in an experiment that generates long lists of candidates. The software is designed to be used by biologists with little or no informatics background (but if you do, you might be interested in the CLI or the R support).
29 lines
732 B
Makefile
29 lines
732 B
Makefile
PORTNAME= erminej
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DISTVERSION= 3.2
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CATEGORIES= biology java
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MASTER_SITES= http://home.pavlab.msl.ubc.ca/ermineJ/distributions/
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DISTNAME= ermineJ-${DISTVERSION}-generic-bundle
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Analyses of gene sets such as gene expression profiling studies
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LICENSE= APACHE20
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LICENSE_FILE= ${WRKSRC}/LICENSE.txt
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USES= zip
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USE_JAVA= yes
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WRKSRC= ${WRKDIR}/ermineJ-${DISTVERSION}
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NO_BUILD= yes
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NO_ARCH= yes
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SUB_FILES= ermineJ
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SUB_LIST= JAVA_HOME=${JAVA_HOME}
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do-install:
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cd ${WRKSRC}/lib && ${COPYTREE_SHARE} . \
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${STAGEDIR}${JAVAJARDIR}/${PORTNAME}
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${INSTALL_SCRIPT} ${WRKDIR}/ermineJ ${STAGEDIR}${PREFIX}/bin
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${INSTALL_DATA} ${WRKSRC}/bin/forehead.conf ${STAGEDIR}${PREFIX}/etc
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.include <bsd.port.mk>
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