fb16dfecae
Commit b7f05445c0 has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
15 lines
934 B
Text
15 lines
934 B
Text
bx-python is a python library and associated set of scripts to allow for rapid
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implementation of genome scale analyses. The library contains a variety of
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useful modules, but the particular strengths are:
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Classes for reading and working with genome-scale multiple local alignments
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(in MAF, AXT, and LAV formats). Generic data structure for indexing on disk
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files that contain blocks of data associated with intervals on various
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sequences (used, for example, to provide random access to individual
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alignments in huge files; optomized for use over network filesystems).
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Data structures for working with intervals on sequences:
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* "Binned bitsets" which act just like chromosome sized bit arrays,
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but lazily allocate regions and allow large blocks of all set or
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all unset bits to be stored compactly
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* "Intersecter" for performing fast intersection tests that preserve
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both query and target intervals and associated annotation
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