a3686c5ead
protein sequence search programs - FASTA3 updates only some of the elements of FASTA2, which is why I have submitted ports of both versions (as biology/fasta and biology/fasta3) PR: 24716 Submitted by: Johann Visagie <johann@egenetics.com>
20 lines
971 B
Text
20 lines
971 B
Text
Version 3 of the FASTA packages contains many programs for searching DNA and
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protein databases and one program (prss3) for evaluating statistical
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significance from randomly shuffled sequences. Several additional analysis
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programs, including programs that produce local alignments, are available as
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part of version 2 of the FASTA package, which is available as the port
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biology/fasta.
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FASTA is described in: W. R. Pearson and D. J. Lipman (1988), "Improved
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Tools for Biological Sequence Analysis", PNAS 85:2444-2448; W. R. Pearson
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(1996) "Effective protein sequence comparison" Meth. Enzymol. 266:227-258;
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Pearson et. al. (1997) Genomics 46:24-36; Pearson, (1999) Meth. in
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Molecular Biology 132:185-219.
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The FASTA3 suite is distributed freely subject to the condition that it may
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not be sold or incorporated into a commercial product.
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Author: William R Pearson <wrp@virginia.edu>
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WWW: http://fasta.bioch.virginia.edu/
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-- Johann Visagie <johann@egenetics.com>
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