The logic in USES=python will automatically convert this to 3.8+ by itself. Adjust two ports that only had Python 3.7 mentioned but build fine on Python 3.8 too. finance/quickfix: mark BROKEN with PYTHON libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++ -DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable -Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi -Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings -Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x -MT _quickfix_la-QuickfixPython.lo -MD -MP -MF .deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o .libs/_quickfix_la-QuickfixPython.o warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean '-Wno-uninitialized'? [-Wunknown-warning-option] QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found ^~~~~~~~~~ 1 warning and 1 error generated. Reviewed by: portmgr, vishwin, yuri Differential Revision: <https://reviews.freebsd.org/D40568>
33 lines
853 B
Makefile
33 lines
853 B
Makefile
PORTNAME= biopython
|
|
DISTVERSION= 1.81
|
|
PORTREVISION= 1
|
|
CATEGORIES= biology python
|
|
MASTER_SITES= http://www.biopython.org/DIST/
|
|
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
|
|
|
MAINTAINER= mauricio@arareko.net
|
|
COMMENT= Collection of Python modules for bioinformatics
|
|
WWW= https://biopython.org/
|
|
|
|
LICENSE= BSD3CLAUSE
|
|
LICENSE_FILE= ${WRKSRC}/LICENSE.rst
|
|
|
|
BUILD_DEPENDS= ${PYNUMPY}
|
|
RUN_DEPENDS= ${PYNUMPY}
|
|
|
|
USES= python
|
|
USE_PYTHON= distutils autoplist
|
|
|
|
OPTIONS_DEFINE= REPORTLAB
|
|
OPTIONS_DEFAULT= REPORTLAB
|
|
|
|
REPORTLAB_DESC= PDF support in Bio.Graphics module
|
|
REPORTLAB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${PY_FLAVOR}
|
|
|
|
post-install:
|
|
@${STRIP_CMD} \
|
|
${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*.so \
|
|
${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*/*.so \
|
|
${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*/*/*.so \
|
|
|
|
.include <bsd.port.mk>
|