51 lines
1.6 KiB
Makefile
51 lines
1.6 KiB
Makefile
PORTNAME= abyss
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DISTVERSION= 2.3.7
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CATEGORIES= biology
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler
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WWW= https://www.bcgsc.ca/resources/software/abyss
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BROKEN_i386= result of comparison of constant 18446744073709551615 with expression of type 'size_t', see https://github.com/bcgsc/abyss/issues/310
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BUILD_DEPENDS= ${LOCALBASE}/include/boost/version.hpp:devel/boost-libs \
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ghc:lang/ghc \
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pandoc:textproc/hs-pandoc # pandoc is required just for one man page: abyss-sealer
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LIB_DEPENDS= libbtllib.so:biology/btllib \
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libffi.so:devel/libffi \
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libgmp.so:math/gmp \
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libmpich.so:net/mpich # binaries aren't linked with libmpich.so for some reason
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RUN_DEPENDS= bash:shells/bash \
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gmake:devel/gmake
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USES= autoreconf compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite
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USE_GITHUB= yes
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GH_ACCOUNT= bcgsc
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SHEBANG_FILES= bin/${PORTNAME}-* DataBase/abyss-db-txt
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SHEBANG_LANG= make
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make_OLD_CMD= /usr/bin/make
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make_CMD= ${PREFIX}/bin/gmake
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs
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TEST_TARGET= check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
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OPTIONS_DEFINE= DOCS
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PORTDOCS= *
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PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
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.include <bsd.port.pre.mk>
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.if ${OPSYS} == FreeBSD && ( ${OSVERSION} >= 1400079 || ( ${OSVERSION} >= 1302505 && ${OSVERSION} < 1400000 ))
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CFLAGS+= -Wno-error=unused-but-set-variable
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.endif
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.include <bsd.port.post.mk>
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