702ce22305
sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
20 lines
717 B
C++
20 lines
717 B
C++
--- ./SequenceReader/SequenceReader.cpp.orig 2004-03-01 13:51:29.000000000 -0300
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+++ ./SequenceReader/SequenceReader.cpp 2008-06-12 15:39:31.000000000 -0300
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@@ -179,7 +179,7 @@
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for ( ; i != reverseBuffer_.end() ; i++, j-- )
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{
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- *i= reverseChar[ *j ];
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+ *i= reverseChar[ (int) *j ];
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// cout << "char: " << (int)*j << *j << " - " << (int)*i << *i << endl;
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}
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@@ -356,7 +356,7 @@
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throw SSAHAException
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("Requested seq start exceeds requested seq end in SourceReaderIndex::extractSource");
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} // ~if
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- else if (seqEnd>lastSourceSeq_.size() )
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+ else if (seqEnd>(int)lastSourceSeq_.size() )
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{
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cout << seqEnd << " " << lastSourceSeq_.size() << endl;
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throw SSAHAException
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