ba601f25ac
was a stub, provide a real one. While here, pet portlint. Approved by: portmgr (tier-2 blanket)
45 lines
1.4 KiB
Makefile
45 lines
1.4 KiB
Makefile
# Created by: Jason Bacon <bacon4000@gmail.com>
|
|
# $FreeBSD$
|
|
|
|
PORTNAME= plinkseq
|
|
PORTVERSION= 0.10
|
|
PORTREVISION= 1
|
|
CATEGORIES= biology science
|
|
MASTER_SITES= http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/
|
|
# Default DISTNAME is correct, so leave it alone.
|
|
DISTFILES= ${PORTNAME}-src-${PORTVERSION}.tgz
|
|
|
|
MAINTAINER= bacon4000@gmail.com
|
|
COMMENT= Toolset for working with human genetic variation data
|
|
|
|
LICENSE= GPLv2
|
|
|
|
BROKEN_aarch64= Does not build: Host architecture was not detected as supported by protobuf
|
|
BROKEN_mips64= Does not build: Host architecture was not detected as supported by protobuf
|
|
BROKEN_powerpc64= Does not build: atomicops.h: error: stray '\#' in program
|
|
|
|
USES= libtool gmake
|
|
|
|
post-patch:
|
|
${REINPLACE_CMD} \
|
|
-e 's|PF_INET|AF_INET|g' \
|
|
${WRKSRC}/sources/mongoose/sources/lib/mongoose.c
|
|
${REINPLACE_CMD} \
|
|
-e 's|g++|${CXX}|g' \
|
|
-e 's|gcc|${CC}|g' \
|
|
-e 's|CXXFLAGS = -O3|CXXFLAGS = ${CXXFLAGS}|g' \
|
|
-e 's|ALL_CFLAGS =-O3|ALL_CFLAGS = ${CFLAGS}|g' \
|
|
${WRKSRC}/config_defs.Makefile
|
|
${REINPLACE_CMD} \
|
|
-e 's| -ldl||g' \
|
|
-e 's| $$(STATIC_FLAG)||g' \
|
|
${WRKSRC}/Makefile
|
|
|
|
do-install:
|
|
.for f in behead browser gcol mm mongoose pdas pseq smp tab2vcf
|
|
${INSTALL_PROGRAM} ${WRKSRC}/build/execs/${f} ${STAGEDIR}${PREFIX}/bin
|
|
.endfor
|
|
${INSTALL_DATA} ${WRKSRC}/sources/plinkseq/build/lib/libplinkseq.a \
|
|
${STAGEDIR}${PREFIX}/lib
|
|
|
|
.include <bsd.port.mk>
|