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freebsd-ports/biology
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Alexey Dokuchaev 44ff373a2a From the PR: 
I've added PORTREVISION to the port and set it to the release
  date as in the lang/gcc* ports.  Since the distinfo file is not
  used, this would help users know when they have to update their
  ports.

  Although newer release might be made, the idea is to bump
  PORTREVISION for important feature releases on when significant
  bugs are fixed.

  Other minor (cosmetic) changes also applied.

PR:		ports/78963
Sumbitted by:	maintainer
2005-03-18 13:01:07 +00:00
..
ariadne Add ariadne 1.3, programs to compare protein sequences and 2004-06-22 14:29:59 +00:00
artemis - Update to version 6 2005-03-12 08:01:19 +00:00
avida The build should be fixed now, so remove BROKEN mark. 2004-09-23 07:10:32 +00:00
babel - Remove obsolete MASTER_SITES 2004-06-08 08:19:40 +00:00
biojava - Update biology/biojava to 1.30 2004-11-22 15:47:58 +00:00
blast From the PR: 2005-03-18 13:01:07 +00:00
chemeq SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
clustalw - Add an end-of-string to each line of the input 2003-08-28 04:51:02 +00:00
coalesce Fix unfetchable tarball, it was renamed and relocated on original 2005-02-18 12:58:07 +00:00
crimap SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
deft BROKEN on 5.x: Does not install 2004-09-18 16:35:47 +00:00
distribfold Drop maintainership 2004-06-24 14:28:12 +00:00
dna-qc BROKEN on alpha 5.x: does not compile 2004-02-23 03:54:36 +00:00
embassy - Fix OPTIONS handling 2004-12-11 23:32:32 +00:00
emboss - Add (or fix) CONFLICTS line. The ports install bin/digest. 2005-02-11 21:11:51 +00:00
fasta With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
fasta3 Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a 2004-07-01 03:02:23 +00:00
fastdnaml Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
finchtv Add finchtv 1.3.0, a chromatogram trace viewer. 2005-03-11 21:16:16 +00:00
flip SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
fluctuate Readd mistakenly removed patch to honour CC/CFLAGS. 2005-02-18 13:41:09 +00:00
garlic Make portlint happy by replacing space to tab 2004-05-06 19:49:54 +00:00
genpak Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
gff2ps [PATCH] biology/gff2ps distsite fix 2004-06-01 02:23:41 +00:00
gperiodic Bump PORTREVISION to chase the glib20 shared lib version change. 2005-03-12 10:54:27 +00:00
grappa This is now buildable on 5.x, remove BROKEN. 2004-08-17 10:29:40 +00:00
hmmer - Remove a junk white space. 2004-11-25 22:58:29 +00:00
kinemage SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
L-Breeder Bump PORTREVISION to chase the glib20 shared lib version change. 2005-03-12 10:54:27 +00:00
lamarc With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
libgenome Apply a big libtool patch to allow porters to use the libtool installed by 2004-07-09 17:43:11 +00:00
lsysexp Bump PORTREVISION to chase the glib20 shared lib version change. 2005-03-12 10:54:27 +00:00
migrate Fix build on 4.x 2005-02-19 06:38:25 +00:00
molden o update to 4.3 2005-01-20 03:44:55 +00:00
mopac BROKEN on 5.x: Does not install 2004-09-19 01:18:56 +00:00
nab Minor cleanup. 2004-11-23 09:13:14 +00:00
ncbi-toolkit - Update to 2004.06.16 2004-11-01 22:21:02 +00:00
nclever SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
ortep3 - Update MASTER_SITES 2004-06-02 03:32:57 +00:00
p5-AcePerl - Honor CFLAGS 2004-04-16 08:08:11 +00:00
p5-bioperl - add missing MAN1 and MAN3 2004-09-03 17:04:38 +00:00
paml Update to 3.14 2004-11-06 03:55:37 +00:00
phylip - Add some sites I found with Google, as old master site don't have this 2004-12-09 13:33:55 +00:00
platon - Update to last snapshot 2003-12-07 00:29:56 +00:00
povchem After patching, remove the carriage-return characters from povchem.c 2004-04-07 15:39:34 +00:00
primer3 SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
psi88 - Fix MASTER_SITES 2004-05-23 07:36:35 +00:00
py-biopython Fix build on Python 2.4 2004-12-02 05:51:25 +00:00
pymol update to 0.97 2005-02-07 08:39:51 +00:00
rasmol Update to version 2.7.2.1.1 2004-07-09 18:01:11 +00:00
recombine With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
ruby-bio Update to 0.6.2. 2004-12-25 17:52:46 +00:00
seaview - Update to 2004.12.16 2004-12-18 15:14:42 +00:00
seqio SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
sim4 - Update to version 2003.09.21 2004-03-12 13:53:23 +00:00
t_coffee - Update to 2.03 2004-11-25 23:03:54 +00:00
tinker Upgrade to latest revision to make fetchable again. 2004-09-25 08:06:08 +00:00
treepuzzle - Update to 5.2 2004-07-30 22:02:00 +00:00
treeviewx Bump PORTREVISION to chase the glib20 shared lib version change. 2005-03-12 10:54:27 +00:00
tRNAscan-SE SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
wise SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
xdrawchem Add openbabel dependency (bento log forwarded by kris). 2004-04-09 00:59:36 +00:00
xmolwt SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
Makefile - biology/act is redundant after biology/artemis update 2005-03-12 08:07:23 +00:00