eb67c2b94c
Also adds support for aarch64 and powerpc64* Changes: https://github.com/BenLangmead/bowtie/tags PR: 260389 Reported by: pkubaj
92 lines
3.4 KiB
Text
92 lines
3.4 KiB
Text
bin/bowtie
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bin/bowtie-align-l
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bin/bowtie-align-s
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bin/bowtie-build
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bin/bowtie-build-l
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bin/bowtie-build-s
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bin/bowtie-inspect
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bin/bowtie-inspect-l
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bin/bowtie-inspect-s
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%%DATADIR%%/genomes/.cvsignore
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%%DATADIR%%/genomes/NC_008253.fna
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%%DATADIR%%/indexes/e_coli.1.ebwt
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%%DATADIR%%/indexes/e_coli.2.ebwt
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%%DATADIR%%/indexes/e_coli.3.ebwt
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%%DATADIR%%/indexes/e_coli.4.ebwt
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%%DATADIR%%/indexes/e_coli.README
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%%DATADIR%%/indexes/e_coli.rev.1.ebwt
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%%DATADIR%%/indexes/e_coli.rev.2.ebwt
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%%DATADIR%%/reads/e_coli_1000.fa
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%%DATADIR%%/reads/e_coli_1000.fq
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%%DATADIR%%/reads/e_coli_1000.raw
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%%DATADIR%%/reads/e_coli_10000snp.csfasta
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%%DATADIR%%/reads/e_coli_10000snp.fa
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%%DATADIR%%/reads/e_coli_10000snp.fq
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%%DATADIR%%/reads/e_coli_1000_1.fa
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%%DATADIR%%/reads/e_coli_1000_1.fq
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%%DATADIR%%/reads/e_coli_1000_2.fa
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%%DATADIR%%/reads/e_coli_1000_2.fq
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%%DATADIR%%/reads/e_coli_1000_interleaved.fq
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%%DATADIR%%/scripts/best_verify.pl
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%%DATADIR%%/scripts/bowtie-hbb.sh
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%%DATADIR%%/scripts/bs_mapability.pl
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%%DATADIR%%/scripts/build_test.sh
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%%DATADIR%%/scripts/colorize_fasta.pl
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%%DATADIR%%/scripts/colorize_fastq.pl
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%%DATADIR%%/scripts/convert_quals.pl
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%%DATADIR%%/scripts/fastq_to_tabbed.pl
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%%DATADIR%%/scripts/gen_2b_occ_lookup.pl
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%%DATADIR%%/scripts/gen_dnamasks2colormask.pl
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%%DATADIR%%/scripts/gen_occ_lookup.pl
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%%DATADIR%%/scripts/gen_solqual_lookup.pl
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%%DATADIR%%/scripts/infer_fraglen.pl
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%%DATADIR%%/scripts/make_a_thaliana_tair.sh
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%%DATADIR%%/scripts/make_b_taurus_UMD3.sh
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%%DATADIR%%/scripts/make_c_elegans.sh
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%%DATADIR%%/scripts/make_canFam2.sh
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%%DATADIR%%/scripts/make_d_melanogaster.sh
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%%DATADIR%%/scripts/make_e_coli.sh
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%%DATADIR%%/scripts/make_galGal3.sh
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%%DATADIR%%/scripts/make_h_sapiens_ncbi36.sh
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%%DATADIR%%/scripts/make_h_sapiens_ncbi37.sh
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%%DATADIR%%/scripts/make_hg18.sh
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%%DATADIR%%/scripts/make_hg19.sh
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%%DATADIR%%/scripts/make_m_musculus_ncbi37.sh
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%%DATADIR%%/scripts/make_mm8.sh
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%%DATADIR%%/scripts/make_mm9.sh
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%%DATADIR%%/scripts/make_rn4.sh
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%%DATADIR%%/scripts/make_s_cerevisiae.sh
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%%DATADIR%%/scripts/mapability.pl
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%%DATADIR%%/scripts/pe_verify.pl
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%%DATADIR%%/scripts/reconcile_alignments.pl
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%%DATADIR%%/scripts/reconcile_alignments_pe.pl
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%%DATADIR%%/scripts/run-hbb.sh
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%%PORTDOCS%%%%DOCSDIR%%/README
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%%PORTDOCS%%%%DOCSDIR%%/manual.html
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%%PORTDOCS%%%%DOCSDIR%%/release.txt
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%%PORTDOCS%%%%DOCSDIR%%/strip_markdown.pl
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%%PORTDOCS%%%%DOCSDIR%%/style.css
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%%PORTDOCS%%%%DOCSDIR%%/website/css/style.css
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%%PORTDOCS%%%%DOCSDIR%%/website/foot.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/images/bowtie_logo.png
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%%PORTDOCS%%%%DOCSDIR%%/website/images/osi-certified.gif
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%%PORTDOCS%%%%DOCSDIR%%/website/images/sflogo.png
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%%PORTDOCS%%%%DOCSDIR%%/website/images/university.small.horizontal.white.png
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%%PORTDOCS%%%%DOCSDIR%%/website/index.html
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%%PORTDOCS%%%%DOCSDIR%%/website/index.shtml
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%%PORTDOCS%%%%DOCSDIR%%/website/latest-version.txt
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%%PORTDOCS%%%%DOCSDIR%%/website/manual.html
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%%PORTDOCS%%%%DOCSDIR%%/website/manual.shtml
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%%PORTDOCS%%%%DOCSDIR%%/website/manual.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/md5s.shtml
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%%PORTDOCS%%%%DOCSDIR%%/website/md5s.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/news.shtml
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%%PORTDOCS%%%%DOCSDIR%%/website/old_news.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/other_tools.shtml
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%%PORTDOCS%%%%DOCSDIR%%/website/other_tools.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/push.sh
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%%PORTDOCS%%%%DOCSDIR%%/website/recent_news.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/rhsidebar.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/top.ssi
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%%PORTDOCS%%%%DOCSDIR%%/website/tutorial.html
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%%PORTDOCS%%%%DOCSDIR%%/website/tutorial.shtml
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