eee58d187e
Before, we had: site_perl : lib/perl5/site_perl/5.18 site_perl/perl_arch : lib/perl5/site_perl/5.18/mach perl_man3 : lib/perl5/5.18/man/man3 Now we have: site_perl : lib/perl5/site_perl site_arch : lib/perl5/site_perl/mach/5.18 perl_man3 : lib/perl5/site_perl/man/man3 Modules without any .so will be installed at the same place regardless of the Perl version, minimizing the upgrade when the major Perl version is changed. It uses a version dependent directory for modules with compiled bits. As PERL_ARCH is no longer needed in plists, it has been removed from PLIST_SUB. The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now always removed, as is perllocal.pod. The old site_perl and site_perl/arch directories have been kept in the default Perl @INC for all Perl ports, and will be phased out as these old Perl versions expire. PR: 194969 Differential Revision: https://reviews.freebsd.org/D1019 Exp-run by: antoine Reviewed by: perl@ Approved by: portmgr
82 lines
2.5 KiB
Makefile
82 lines
2.5 KiB
Makefile
# Created by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
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# $FreeBSD$
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PORTNAME= velvet
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PORTVERSION= 1.2.10
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PORTREVISION= 2
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CATEGORIES= biology
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MASTER_SITES= http://www.ebi.ac.uk/~zerbino/velvet/
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DISTNAME= ${PORTNAME}_${PORTVERSION}
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MAINTAINER= mzaki@m.u-tokyo.ac.jp
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COMMENT= Sequence assembler for very short reads
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ALL_TARGET= default
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MAXKMERLENGTH?= 31
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VELVET_CATEGORIES?= 2
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MAKE_ENV+= MAXKMERLENGTH=${MAXKMERLENGTH} CATEGORIES=${VELVET_CATEGORIES}
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USES= perl5 gmake shebangfix tar:tgz
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USE_PERL5= run
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BINARIES= velvetg velveth
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SHEBANG_FILES= contrib/shuffleSequences_fasta/shuffleSequences_fasta.pl \
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contrib/shuffleSequences_fasta/shuffleSequences_fastq.pl \
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contrib/VelvetOptimiser-2.2.4/VelvetOptimiser.pl \
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contrib/afg_handling/asmbly_splitter.pl \
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contrib/afg_handling/snp_view.pl \
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contrib/columbus_scripts/enlarge_exons.pl \
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contrib/columbus_scripts/gff2fasta.pl \
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contrib/columbus_scripts/merge_gtf_exons.pl \
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contrib/estimate-exp_cov/velvet-estimate-exp_cov.pl \
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contrib/extractContigReads/extractContigReads.pl \
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contrib/fasta2agp/fasta2agp.pl \
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contrib/observed-insert-length.pl/observed-insert-length.pl \
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contrib/read_prepare/pe_read_prepare.0.1.pl \
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contrib/select_paired/select_paired.pl \
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contrib/show_repeats/show_repeats.pl
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PERLMOD_DIRS= contrib/VelvetOptimiser-2.2.4/VelvetOpt
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PERLMOD_FILES= contrib/VelvetOptimiser-2.2.4/VelvetOpt/Assembly.pm \
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contrib/VelvetOptimiser-2.2.4/VelvetOpt/Utils.pm \
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contrib/VelvetOptimiser-2.2.4/VelvetOpt/gwrap.pm \
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contrib/VelvetOptimiser-2.2.4/VelvetOpt/hwrap.pm
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.if !defined(WITHOUT_PYTHON)
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USES+= python
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SHEBANG_FILES+= contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py
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.endif
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.for f in ${BINARIES} ${SHEBANG_FILES}
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PLIST_FILES+= bin/${f:T}
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.endfor
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.for d in ${PERLMOD_DIRS}
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PLIST_DIRS+= %%SITE_PERL%%/${d:T}
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.endfor
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.for f in ${PERLMOD_FILES}
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PLIST_FILES+= %%SITE_PERL%%/${f:H:T}/${f:T}
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.endfor
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PORTDOCS= ChangeLog Manual.pdf Columbus_manual.pdf
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OPTIONS_DEFINE= DOCS
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.include <bsd.port.options.mk>
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do-install:
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.for f in ${BINARIES}
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${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin
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.endfor
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.for f in ${SHEBANG_FILES}
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${INSTALL_SCRIPT} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin/${f:T}
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.endfor
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.for d in ${PERLMOD_DIRS}
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${MKDIR} ${STAGEDIR}${PREFIX}/${SITE_PERL_REL}/${d:T}
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.endfor
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.for f in ${PERLMOD_FILES}
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${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/${SITE_PERL_REL}/${f:H:T}/${f:T}
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.endfor
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${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_MAN} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
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.include <bsd.port.mk>
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