90 lines
3.6 KiB
Makefile
90 lines
3.6 KiB
Makefile
# Created by: Johann Visagie <johann@egenetics.com>
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# $FreeBSD$
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PORTNAME= bioperl
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PORTVERSION= 1.6.924
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PORTREVISION= 4
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CATEGORIES= biology perl5
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MASTER_SITES= CPAN
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MASTER_SITE_SUBDIR= CPAN:CJFIELDS
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PKGNAMEPREFIX= p5-
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DISTNAME= BioPerl-${PORTVERSION}
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MAINTAINER= perl@FreeBSD.org
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COMMENT= Collection of Perl modules for bioinformatics
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LICENSE= ART10 GPLv1
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LICENSE_COMB= dual
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BUILD_DEPENDS= p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \
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p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \
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p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \
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p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \
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p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \
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p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \
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p5-DBD-mysql>=0:${PORTSDIR}/databases/p5-DBD-mysql \
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p5-Error>=0:${PORTSDIR}/lang/p5-Error \
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p5-GD>=0:${PORTSDIR}/graphics/p5-GD \
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p5-GD-SVG>=0:${PORTSDIR}/graphics/p5-GD-SVG \
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p5-Graph>=0:${PORTSDIR}/math/p5-Graph \
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p5-GraphViz>=0:${PORTSDIR}/graphics/p5-GraphViz \
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p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \
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p5-HTML-TableExtract>=2:${PORTSDIR}/www/p5-HTML-TableExtract \
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p5-IO-stringy>=0:${PORTSDIR}/devel/p5-IO-stringy \
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p5-IO-String>=0:${PORTSDIR}/devel/p5-IO-String \
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p5-Math-Random>=0:${PORTSDIR}/math/p5-Math-Random \
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p5-PostScript>=0:${PORTSDIR}/print/p5-PostScript \
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p5-SOAP-Lite>=0:${PORTSDIR}/net/p5-SOAP-Lite \
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p5-Set-Scalar>=0:${PORTSDIR}/devel/p5-Set-Scalar \
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p5-Sort-Naturally>=1:${PORTSDIR}/textproc/p5-Sort-Naturally \
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p5-Spreadsheet-ParseExcel>=0:${PORTSDIR}/textproc/p5-Spreadsheet-ParseExcel \
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p5-SVG>=0:${PORTSDIR}/textproc/p5-SVG \
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p5-SVG-Graph>=0:${PORTSDIR}/graphics/p5-SVG-Graph \
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p5-Test-Most>=0:${PORTSDIR}/devel/p5-Test-Most \
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p5-Text-Shellwords>=0:${PORTSDIR}/textproc/p5-Text-Shellwords \
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p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \
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p5-URI>=0:${PORTSDIR}/net/p5-URI \
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p5-XML-DOM>=0:${PORTSDIR}/textproc/p5-XML-DOM \
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p5-XML-DOM-XPath>=0:${PORTSDIR}/textproc/p5-XML-DOM-XPath \
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p5-XML-LibXML>=0:${PORTSDIR}/textproc/p5-XML-LibXML \
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p5-XML-Parser>=0:${PORTSDIR}/textproc/p5-XML-Parser \
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p5-XML-SAX>=0:${PORTSDIR}/textproc/p5-XML-SAX \
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p5-XML-SAX-Writer>=0:${PORTSDIR}/textproc/p5-XML-SAX-Writer \
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p5-XML-Simple>=2:${PORTSDIR}/textproc/p5-XML-Simple \
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p5-XML-Twig>=0:${PORTSDIR}/textproc/p5-XML-Twig \
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p5-XML-Writer>=0:${PORTSDIR}/textproc/p5-XML-Writer \
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p5-YAML>=0:${PORTSDIR}/textproc/p5-YAML \
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p5-libwww>=0:${PORTSDIR}/www/p5-libwww \
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p5-libxml>=0:${PORTSDIR}/textproc/p5-libxml
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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USES= perl5 shebangfix
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USE_PERL5= modbuild
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NO_ARCH= yes
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OPTIONS_DEFINE= DOCS EXAMPLES PGTEST SQLITETEST
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PGTEST_DESC= Test PostGreSQL
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SQLITETEST_DESC= Test SQLite
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PGTEST_RUN_DEPENDS= p5-DBD-Pg>=3:${PORTSDIR}/databases/p5-DBD-Pg
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PGTEST_BUILD_DEPENDS= p5-DBD-Pg>=3:${PORTSDIR}/databases/p5-DBD-Pg
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SQLITETEST_RUN_DEPENDS= p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite
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SQLITETEST_BUILD_DEPENDS= p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite
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post-patch:
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@${FIND} ${WRKSRC}/examples ${WRKSRC}/doc -name "*.pl" -o -name "*.cgi" \
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-o -name "*.PL" | ${XARGS} ${REINPLACE_CMD} -i '' -Ee \
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'1s|(/usr)?/bin/perl|${perl_CMD}|'
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post-install:
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@${MKDIR} ${STAGEDIR}${DATADIR}
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${CP} -R ${WRKSRC}/scripts ${WRKSRC}/models ${STAGEDIR}${DATADIR}
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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${CP} -R ${WRKSRC}/examples/* ${STAGEDIR}${EXAMPLESDIR}
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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.for doc in AUTHORS BUGS Changes DEPENDENCIES DEPRECATED INSTALL LICENSE MANIFEST README
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${INSTALL_MAN} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
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.endfor
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${CP} -R ${WRKSRC}/doc ${STAGEDIR}${DOCSDIR}
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.include <bsd.port.mk>
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