702ce22305
sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
11 lines
568 B
C++
11 lines
568 B
C++
--- ./Global/GlobalDefinitions.cpp.orig 2004-03-01 13:51:28.000000000 -0300
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+++ ./Global/GlobalDefinitions.cpp 2008-06-12 15:39:31.000000000 -0300
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@@ -119,7 +119,7 @@
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MakeIntoWord::MakeIntoWord( int bitsPerSymbol, const char* tt ):
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bitsPerSymbol_( bitsPerSymbol ), tt_( tt )
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{
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- for ( unsigned int i(0) ; i < (1<<bitsPerSymbol_) ; ++i )
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+ for ( unsigned int i(0) ; i < ( unsigned int )(1<<bitsPerSymbol_) ; ++i )
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{
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map_.insert( make_pair( (static_cast<char>(tolower(tt[i]))),i ) );
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map_.insert( make_pair( (static_cast<char>(toupper(tt[i]))),i ) );
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