FreeBSD ports tree (read-only mirror)
e25d96e450
Approved by: tobez (implicit) 0.08 20/Feb/2006 15:14 Improved referential integrity between nodes, taxa, and data. Implemented Fastnexus parser Node object silently implements Bio::Tree::NodeI interface if BioPerl is installed Tree object silently implements Bio::Tree::TreeI interface if BioPerl is installed Added convertor methods for XML and CIPRES Implemented more Matrix methods Implemented symbol tables in Bio::Phylo::Util::CONSTANT Implemented visit method for listable objects Implemented caching infrastructure for calculations Changed object-model to inside-out arrays Added Biodiversity measures code by Aki Mimoto Moved constants and exceptions to Bio::Phylo::Util::* Fixed memory leak due to circular references |
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accessibility | ||
arabic | ||
archivers | ||
astro | ||
audio | ||
benchmarks | ||
biology | ||
cad | ||
chinese | ||
comms | ||
converters | ||
databases | ||
deskutils | ||
devel | ||
dns | ||
editors | ||
emulators | ||
finance | ||
french | ||
ftp | ||
games | ||
german | ||
graphics | ||
hebrew | ||
hungarian | ||
irc | ||
japanese | ||
java | ||
korean | ||
lang | ||
math | ||
mbone | ||
misc | ||
Mk | ||
multimedia | ||
net | ||
net-im | ||
net-mgmt | ||
net-p2p | ||
news | ||
palm | ||
polish | ||
ports-mgmt | ||
portuguese | ||
russian | ||
science | ||
security | ||
shells | ||
sysutils | ||
Templates | ||
textproc | ||
Tools | ||
ukrainian | ||
vietnamese | ||
www | ||
x11 | ||
x11-clocks | ||
x11-drivers/synaptics | ||
x11-fm | ||
x11-fonts | ||
x11-servers | ||
x11-themes | ||
x11-toolkits | ||
x11-wm | ||
.cvsignore | ||
CHANGES | ||
COPYRIGHT | ||
KNOBS | ||
LEGAL | ||
Makefile | ||
MOVED | ||
README | ||
UPDATING |
This is the FreeBSD Ports Collection. For an easy to use WEB-based interface to it, please see: http://www.freebsd.org/ports For general information on the ports collection, please see the FreeBSD Handbook which is available from: file://localhost/usr/share/doc/handbook/handbook.html (if you installed the doc distribution on your machine) Or: http://www.freebsd.org/doc/en_US.ISO8859-1/books/handbook/ for the latest official version from FreeBSD-current. The section "The Ports Collection" will tell you how to use the ports and packages and the "Porting Applications" section describes how one can contribute to the ports collection. If you would like to search for a given port, you can do so easily by saying: make search key="<keyword>" Which will generate a list of all ports matching <keyword>. NOTE: This tree can GROW significantly in size during normal usage! The distribution tar files can and do accumulate in /usr/ports/distfiles, and the individual ports will also use up lots of space in their work subdirectories unless you remember to "make clean" after you're done building a given port. /usr/ports/distfiles can also be periodically cleaned without ill-effect, though if you don't have the original distribution tarball(s) for something on CDROM then you will need to pull it all over your network connection again if you ever try to build the associated port.