47 lines
1.5 KiB
Makefile
47 lines
1.5 KiB
Makefile
# Created by: Tony Maher
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# $FreeBSD$
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PORTNAME= mummer
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PORTVERSION= 3.23
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PORTREVISION= 2
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CATEGORIES= biology
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MASTER_SITES= SF
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DISTNAME= MUMmer${PORTVERSION}
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Modular system for rapid whole genome alignment
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LICENSE= ART10
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LICENSE_FILE= ${WRKSRC}/LICENSE
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USES= gmake perl5 shebangfix
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SHEBANG_FILES= scripts/*.csh scripts/*.pl
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SHEBANG_LANG= csh
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perl_OLD_CMD= __PERL_PATH
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csh_OLD_CMD= __CSH_PATH
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csh_CMD= /bin/csh
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_SHEBANG_REINPLACE_ARGS+= -e "s|__BIN_DIR|${PREFIX}/bin|g;s|__AUX_BIN_DIR|${PREFIX}/libexec/mummer|g;s|__SCRIPT_DIR|${PREFIX}/libexec/mummer|g"
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PROGRAMS= annotate combineMUMs delta-filter gaps \
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mgaps mummer repeat-match show-aligns \
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show-coords show-diff show-snps show-tiling
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SCRIPTS= dnadiff.pl exact-tandems.csh mapview.pl mummerplot.pl nucmer.pl \
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nucmer2xfig.pl promer.pl run-mummer1.csh run-mummer3.csh
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LIBEXEC= Foundation.pm tandem-repeat.awk
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DOCUMENTS= COPYRIGHT INSTALL LICENSE README
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OPTIONS_DEFINE= DOCS
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do-install:
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${INSTALL_PROGRAM} ${PROGRAMS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin
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.for file in ${SCRIPTS}
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${INSTALL_SCRIPT} ${WRKSRC}/scripts/${file} ${STAGEDIR}${PREFIX}/bin/${file:R}
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.endfor
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@${MKDIR} ${STAGEDIR}${PREFIX}/libexec/${PORTNAME}
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${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/* ${STAGEDIR}${PREFIX}/libexec/${PORTNAME}
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${INSTALL_DATA} ${LIBEXEC:S|^|${WRKSRC}/scripts/|} ${STAGEDIR}${PREFIX}/libexec/${PORTNAME}
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${DOCUMENTS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
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.include <bsd.port.mk>
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