565d0310d5
Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp
34 lines
735 B
Makefile
34 lines
735 B
Makefile
# New ports collection makefile for: mrbayes
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# Date created: 11 December 2007
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# Whom: mzaki@biol.s.u-tokyo.ac.jp
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#
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# $FreeBSD$
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#
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PORTNAME= mrbayes
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PORTVERSION= 3.1.2
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CATEGORIES= biology
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MASTER_SITES= SF
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MAINTAINER= mzaki@biol.s.u-tokyo.ac.jp
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COMMENT= Bayesian inference of phylogeny
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USE_GMAKE= yes
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LIB_DEPENDS+= readline.5:${PORTSDIR}/devel/readline
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PLIST_FILES= bin/mb
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PORTEXAMPLES= adh.nex anolis.nex avian_ovomucoids.nex bglobin.nex \
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cynmix.nex kim.nex primates.nex replicase.nex
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do-install:
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@${INSTALL_PROGRAM} ${WRKSRC}/mb ${PREFIX}/bin/
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.if !defined(NOPORTEXAMPLES)
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@${MKDIR} ${EXAMPLESDIR}
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.for file in ${PORTEXAMPLES}
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@${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR}
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.endfor
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.endif
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.include <bsd.port.mk>
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