92 lines
3 KiB
Text
92 lines
3 KiB
Text
--- Makefile.orig 2019-02-28 20:13:59 UTC
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+++ Makefile
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@@ -1,6 +1,6 @@
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-CC = g++ -Wall -ggdb
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-CC = g++ -pg
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-CC = g++
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+CXX ?= g++ -Wall -ggdb
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+CXX ?= g++ -pg
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+CXX ?= g++
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# default with OpenMP
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# with OpenMP
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@@ -47,7 +47,7 @@ PROGS = cd-hit cd-hit-est cd-hit-2d cd-h
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CCFLAGS := $(CPPFLAGS) $(CCFLAGS) $(CXXFLAGS)
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.c++.o:
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- $(CC) $(CCFLAGS) -c $<
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+ $(CXX) $(CCFLAGS) -c $<
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all: $(PROGS)
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@@ -57,52 +57,53 @@ clean:
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# programs
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cd-hit: cdhit-common.o cdhit-utility.o cdhit.o
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- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
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+ $(CXX) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
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cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o
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- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
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+ $(CXX) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
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cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o
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- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
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+ $(CXX) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
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cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o
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- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
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+ $(CXX) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
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cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o
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- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
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+ $(CXX) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
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cd-hit-454: cdhit-common.o cdhit-utility.o cdhit-454.o
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- $(CC) $(CCFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
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+ $(CXX) $(CCFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
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# objects
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cdhit-common.o: cdhit-common.c++ cdhit-common.h
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- $(CC) $(CCFLAGS) cdhit-common.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit-common.c++ -c
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cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h
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- $(CC) $(CCFLAGS) cdhit-utility.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit-utility.c++ -c
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cdhit.o: cdhit.c++ cdhit-utility.h
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- $(CC) $(CCFLAGS) cdhit.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit.c++ -c
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cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h
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- $(CC) $(CCFLAGS) cdhit-2d.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit-2d.c++ -c
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cdhit-est.o: cdhit-est.c++ cdhit-utility.h
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- $(CC) $(CCFLAGS) cdhit-est.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit-est.c++ -c
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cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h
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- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit-est-2d.c++ -c
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cdhit-div.o: cdhit-div.c++ cdhit-common.h
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- $(CC) $(CCFLAGS) cdhit-div.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit-div.c++ -c
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cdhit-454.o: cdhit-454.c++ cdhit-common.h
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- $(CC) $(CCFLAGS) cdhit-454.c++ -c
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+ $(CXX) $(CCFLAGS) cdhit-454.c++ -c
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-PREFIX ?= /usr/local/bin
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+PREFIX ?= /usr/local
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install:
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+ mkdir -p $(DESTDIR)$(PREFIX)/bin
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for prog in $(PROGS); do \
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- install -m 0755 $$prog $(PREFIX); \
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+ install -m 0755 $$prog $(DESTDIR)$(PREFIX)/bin; \
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done
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- install -m 0755 *.pl $(PREFIX);
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+ install -m 0755 *.pl $(DESTDIR)$(PREFIX)/bin
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