e25d96e450
Approved by: tobez (implicit)
0.08 20/Feb/2006 15:14
Improved referential integrity between nodes,
taxa, and data.
Implemented Fastnexus parser
Node object silently implements Bio::Tree::NodeI
interface if BioPerl is installed
Tree object silently implements Bio::Tree::TreeI
interface if BioPerl is installed
Added convertor methods for XML and CIPRES
Implemented more Matrix methods
Implemented symbol tables in Bio::Phylo::Util::CONSTANT
Implemented visit method for listable objects
Implemented caching infrastructure for calculations
Changed object-model to inside-out arrays
Added Biodiversity measures code by Aki Mimoto
Moved constants and exceptions to Bio::Phylo::Util::*
Fixed memory leak due to circular references
48 lines
1.7 KiB
Text
48 lines
1.7 KiB
Text
bin/LRmb.pl
|
|
bin/age2bl.pl
|
|
bin/bremer.pl
|
|
bin/dnd2svg.pl
|
|
bin/droptip.pl
|
|
bin/postmb.pl
|
|
%%SITE_PERL%%/Bio/Phylo.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Forest.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Generator.pm
|
|
%%SITE_PERL%%/Bio/Phylo/IO.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Listable.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Manual.pod
|
|
%%SITE_PERL%%/Bio/Phylo/Matrices.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Matrices/Alignment.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Matrices/Sequence.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Parsers/Fastnewick.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Parsers/Fastnexus.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Taxa.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
|
|
%%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
|
|
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo/.packlist
|
|
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo
|
|
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo/Util
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo/Taxa
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo/Parsers
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo/Forest
|
|
@dirrm %%SITE_PERL%%/Bio/Phylo
|
|
@dirrmtry %%SITE_PERL%%/Bio
|