47 lines
1.2 KiB
Makefile
47 lines
1.2 KiB
Makefile
PORTNAME= augustus
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DISTVERSIONPREFIX= v
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DISTVERSION= 3.5.0
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PORTREVISION= 1
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CATEGORIES= biology science
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PKGNAMESUFFIX= -gene-prediction
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Genome annotation tool
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WWW= http://bioinf.uni-greifswald.de/webaugustus/
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LICENSE= GPLv3
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LIB_DEPENDS= libbamtools.so:biology/bamtools \
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libboost_iostreams.so:devel/boost-libs \
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libcolamd.so:math/suitesparse-colamd \
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libgsl.so:math/gsl \
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libhts.so:biology/htslib \
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liblpsolve55.so:math/lp_solve \
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libmysqlpp.so:databases/mysql++
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RUN_DEPENDS= samtools:biology/samtools
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USES= gmake localbase:ldflags mysql perl5 python sqlite shebangfix
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USE_GITHUB= yes
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GH_ACCOUNT= Gaius-Augustus
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GH_PROJECT= Augustus
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SHEBANG_GLOB= *.pl *.py
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SHEBANG_FILES= scripts/checkUTR
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CXXFLAGS+= -I${LOCALBASE}/include/bamtools \
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-I${LOCALBASE}/include/lpsolve \
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-I${LOCALBASE}/include/mysql
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LDFLAGS+= -L${LOCALBASE}/lib/mysql
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MAKE_ARGS= INSTALLDIR=${LOCALBASE}/${PORTNAME} RLN="${RLN}"
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BINARY_ALIAS= make=${GMAKE} python3=${PYTHON_CMD}
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TEST_TARGET= test
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post-install:
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@${STRIP_CMD} ${STAGEDIR}${PREFIX}/${PORTNAME}/bin/*
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@${RM} ${STAGEDIR}${PREFIX}/${PORTNAME}/scripts/pasapolyA2hints.pl.orig
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.include <bsd.port.mk>
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